RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 C2orf88Q9BSF0 95 aa8.83□□□□□ -1
SHMT2-228ENST00000557302 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.82□□□□□ -1
SHMT2-228ENST00000557302 LINC01549A6NIU2 74 aa8.82□□□□□ -1
SHMT2-228ENST00000557302 LORP23490 312 aaPredicted RBP8.82□□□□□ -1
SHMT2-228ENST00000557302 PAPPA-AS1Q5QFB9 102 aa8.82□□□□□ -1
SHMT2-228ENST00000557302 SCGB3A1Q96QR1 104 aa8.82□□□□□ -1
SHMT2-228ENST00000557302 TIMM17AQ99595 171 aa8.82□□□□□ -1
SHMT2-228ENST00000557302 VCX2Q9H322 139 aa8.82□□□□□ -1
SHMT2-228ENST00000557302 ERASQ7Z444 233 aa8.81□□□□□ -1
SHMT2-228ENST00000557302 C5orf38Q86SI9 138 aa8.81□□□□□ -1
SHMT2-228ENST00000557302 C9orf163Q8N9P6 203 aa8.81□□□□□ -1
SHMT2-228ENST00000557302 AMELXQ99217 191 aa8.81□□□□□ -1
SHMT2-228ENST00000557302 DNAH8Q96JB1 4490 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 SCO1O75880 301 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 SLPIP03973 132 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 LINC00614P0C842 121 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 XGP55808 180 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 RAB5BP61020 215 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 LINC00173Q6ZV60 143 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 FAM30AQ9NZY2 134 aa8.8□□□□□ -1
SHMT2-228ENST00000557302 IGHV3OR16-9A0A0B4J2B5 98 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 ZNF561-AS1K7EIQ3 104 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 APOMO95445 188 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 UBE2D1P51668 147 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 LINC00242Q5T6M2 205 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 ZC2HC1BQ5TFG8 222 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 URB1-AS1Q96HZ7 61 aa8.79□□□□□ -1
SHMT2-228ENST00000557302 TRGC2P03986 189 aa8.78□□□□□ -1
SHMT2-228ENST00000557302 Q6ZSA8 131 aa8.78□□□□□ -1
SHMT2-228ENST00000557302 LINC00528Q8N1L1 170 aa8.78□□□□□ -1
SHMT2-228ENST00000557302 IGHV3-64A0A075B6Q5 118 aa8.77□□□□□ -1.01
SHMT2-228ENST00000557302 COLCA2A8K830 154 aa8.77□□□□□ -1.01
SHMT2-228ENST00000557302 HBDP02042 147 aa8.77□□□□□ -1.01
SHMT2-228ENST00000557302 LINC00526Q96FQ7 95 aa8.77□□□□□ -1.01
SHMT2-228ENST00000557302 HAMPP81172 84 aa8.76□□□□□ -1.01
SHMT2-228ENST00000557302 OR10D4PQ8NGN7 298 aa8.76□□□□□ -1.01
SHMT2-228ENST00000557302 IGLV4-69A0A075B6H9 119 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 A0A087WZ39 114 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 A0A096LNJ9 63 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.75□□□□□ -1.01
SHMT2-228ENST00000557302 SEC11AP67812 179 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 COX6A2Q02221 97 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 SPAG11BQ08648 103 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 PMCHL1Q16048 86 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 SDIM1Q6ZPB5 146 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 ORAOV1Q8WV07 137 aa8.75□□□□□ -1.01
SHMT2-228ENST00000557302 CHCHD1Q96BP2 118 aaKnown RBP8.75□□□□□ -1.01
SHMT2-228ENST00000557302 SYCNQ0VAF6 134 aa8.74□□□□□ -1.01
SHMT2-228ENST00000557302 FAM19A3Q7Z5A8 133 aa8.74□□□□□ -1.01
SHMT2-228ENST00000557302 BAGE3Q86Y29 109 aa8.74□□□□□ -1.01
SHMT2-228ENST00000557302 C2orf48Q96LS8 159 aa8.74□□□□□ -1.01
SHMT2-228ENST00000557302 CARD19Q96LW7 228 aa8.74□□□□□ -1.01
SHMT2-228ENST00000557302 CHAC1Q9BUX1 264 aa8.74□□□□□ -1.01
SHMT2-228ENST00000557302 GEMIN7Q9H840 131 aaKnown RBP8.74□□□□□ -1.01
SHMT2-228ENST00000557302 HERVK_113P63121 156 aa8.73□□□□□ -1.01
SHMT2-228ENST00000557302 PMVKQ15126 192 aa8.73□□□□□ -1.01
SHMT2-228ENST00000557302 Q8N1X5 172 aa8.73□□□□□ -1.01
SHMT2-228ENST00000557302 CAMK2N2Q96S95 79 aa8.73□□□□□ -1.01
SHMT2-228ENST00000557302 CST9LQ9H4G1 147 aa8.73□□□□□ -1.01
SHMT2-228ENST00000557302 FAT1Q14517 4588 aa8.72□□□□□ -1.01
SHMT2-228ENST00000557302 A0A0J9YXV3 536 aa8.72□□□□□ -1.01
SHMT2-228ENST00000557302 PDZD11Q5EBL8 140 aa8.72□□□□□ -1.01
SHMT2-228ENST00000557302 SCXQ7RTU7 201 aa8.72□□□□□ -1.01
SHMT2-228ENST00000557302 LINC01561Q8N1V8 128 aa8.72□□□□□ -1.01
SHMT2-228ENST00000557302 PKIGQ9Y2B9 76 aa8.72□□□□□ -1.01
SHMT2-228ENST00000557302 HSBP1O75506 76 aa8.71□□□□□ -1.02
SHMT2-228ENST00000557302 ATP5LO75964 103 aa8.71□□□□□ -1.02
SHMT2-228ENST00000557302 SMR3BP02814 79 aaPredicted RBP8.71□□□□□ -1.02
SHMT2-228ENST00000557302 NDUFA6P56556 154 aa8.71□□□□□ -1.02
SHMT2-228ENST00000557302 Q6ZRU5 148 aa8.71□□□□□ -1.02
SHMT2-228ENST00000557302 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.71□□□□□ -1.02
SHMT2-228ENST00000557302 TINCRA0A1B0GVN0 87 aa8.7□□□□□ -1.02
SHMT2-228ENST00000557302 F8WDY8 70 aa8.7□□□□□ -1.02
SHMT2-228ENST00000557302 LINC00469Q8N7U9 141 aa8.7□□□□□ -1.02
SHMT2-228ENST00000557302 CIRBP-AS1Q8TBR5 109 aa8.7□□□□□ -1.02
SHMT2-228ENST00000557302 CDKN2A-AS1Q9UH64 79 aa8.7□□□□□ -1.02
SHMT2-228ENST00000557302 PANO1I0J062 215 aa8.69□□□□□ -1.02
SHMT2-228ENST00000557302 NDUFA1O15239 70 aa8.69□□□□□ -1.02
SHMT2-228ENST00000557302 PACRGQ96M98 296 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-228ENST00000557302 EPM2AB3EWF7 344 aa8.68□□□□□ -1.02
SHMT2-228ENST00000557302 SERF1AO75920 110 aa8.68□□□□□ -1.02
SHMT2-228ENST00000557302 CHTF8P0CG12 524 aa8.68□□□□□ -1.02
SHMT2-228ENST00000557302 CIRBPQ14011 172 aaKnown RBP8.68□□□□□ -1.02
SHMT2-228ENST00000557302 KIAA0087Q14695 138 aa8.68□□□□□ -1.02
SHMT2-228ENST00000557302 DPH3Q96FX2 82 aa8.68□□□□□ -1.02
SHMT2-228ENST00000557302 KRTAP4-5Q9BYR2 181 aa8.68□□□□□ -1.02
SHMT2-228ENST00000557302 IGLV5-45A0A087WSX0 123 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 IGKV2-24A0A0C4DH68 120 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 FAM229AH3BQW9 127 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 PRSS2P07478 247 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 RNF151Q2KHN1 245 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 Q5VSD8 79 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 FAM19A2Q8N3H0 131 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 SPACA4Q8TDM5 124 aa8.67□□□□□ -1.02
SHMT2-228ENST00000557302 MRPL35Q9NZE8 188 aaKnown RBP8.67□□□□□ -1.02
SHMT2-228ENST00000557302 A0A096LNI7 61 aa8.66□□□□□ -1.02
SHMT2-228ENST00000557302 LOC107984640A0A0U1RRK4 108 aa8.66□□□□□ -1.02
SHMT2-228ENST00000557302 IGLC3P0DOY3 106 aa8.66□□□□□ -1.02
SHMT2-228ENST00000557302 LINC00310P59036 64 aa8.66□□□□□ -1.02
SHMT2-228ENST00000557302 TOMM7Q9P0U1 55 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms