RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 KIAA1109Q2LD37 5005 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 EPPK1P58107 5090 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 TRBV6-1A0A0K0K1D8 114 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 K7EQZ3 153 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 SSSCA1O60232 199 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 APOC2P02655 101 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 DCDP81605 110 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 CATR1Q13166 79 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 COMMD6Q7Z4G1 85 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 C8orf59Q8N0T1 100 aaPredicted RBP-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 C1orf54Q8WWF1 131 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 TSC22D3Q99576 134 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 LINC00474Q9P2X8 69 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 KIF21AQ7Z4S6 1674 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 TCHHQ07283 1943 aa-0.44□□□□□ -2.48
SCFD1-218ENST00000556256 STARD9Q9P2P6 4700 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 PAPPAQ13219 1627 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 NAIPQ13075 1403 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 FXYD6-FXYD2A0A087WZ82 144 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 APOC3P02656 99 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 FAM107BQ9H098 131 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 ZFHX3Q15911 3703 aa-0.45□□□□□ -2.48
SCFD1-218ENST00000556256 KDM5AP29375 1690 aaKnown RBP-0.46□□□□□ -2.48
SCFD1-218ENST00000556256 QRICH2Q9H0J4 1663 aa-0.46□□□□□ -2.48
SCFD1-218ENST00000556256 LOC285095A0A1B0GVY8 99 aa-0.46□□□□□ -2.48
SCFD1-218ENST00000556256 PIGYQ3MUY2 71 aa-0.46□□□□□ -2.48
SCFD1-218ENST00000556256 LAMA5O15230 3695 aa-0.46□□□□□ -2.48
SCFD1-218ENST00000556256 HYDINQ4G0P3 5121 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 NSD3Q9BZ95 1437 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 A2ML1A8K2U0 1454 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 OOSP1A8MZH6 123 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 SFT2D2O95562 160 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 SPRR1BP22528 89 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 MRPL54Q6P161 138 aaKnown RBP-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 DEFB123Q8N688 67 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 PP6455Q8WZ26 134 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 SHROOM2Q13796 1616 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 PCNX1Q96RV3 2341 aa-0.47□□□□□ -2.48
SCFD1-218ENST00000556256 SETD2Q9BYW2 2564 aaPredicted RBP-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 NBPF19A0A087WUL8 3843 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 NBASA2RRP1 2371 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 MXRA5Q9NR99 2828 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 MYOM1P52179 1685 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 IFNGP01579 166 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 AKAIN1P0CW23 69 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 KRTAP19-8Q3LI54 63 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 SPRR4Q96PI1 79 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 CDC42SE2Q9NRR3 84 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 DNAH6Q9C0G6 4158 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 SHANK2Q9UPX8 1470 aa-0.48□□□□□ -2.49
SCFD1-218ENST00000556256 TNFP01375 233 aa-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 COX6B1P14854 86 aa-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 ROCK2O75116 1388 aaKnown RBP-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 SMG6Q86US8 1419 aaKnown RBP-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 PKD1P98161 4303 aa-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 RAPGEF6Q8TEU7 1601 aa-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 ROBO1Q9Y6N7 1651 aa-0.49□□□□□ -2.49
SCFD1-218ENST00000556256 TEP1Q99973 2627 aaKnown RBP-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 HERC2O95714 4834 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 LOC730098B7Z3J9 87 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 CHKB-CPT1BH3BT56 60 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 KLK9Q2XQG4 91 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 MYOZ3Q8TDC0 251 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 TMEM263Q8WUH6 116 aaKnown RBP-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 REV3LO60673 3130 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 ARHGEF5Q12774 1597 aa-0.5□□□□□ -2.49
SCFD1-218ENST00000556256 MGPP08493 103 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 IGLC1P0CG04 106 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 KRTAP20-2Q3LI61 65 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 KRTAP6-2Q3LI66 62 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 KNL1Q8NG31 2342 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 DPH3P1Q9H4G8 78 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 NXT2Q9NPJ8 142 aaKnown RBP-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 TULP4Q9NRJ4 1543 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 WDR7Q9Y4E6 1490 aa-0.51□□□□□ -2.49
SCFD1-218ENST00000556256 FMN2Q9NZ56 1722 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 HMGXB3Q12766 1538 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 DNAH9Q9NYC9 4486 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 KTN1Q86UP2 1357 aaKnown RBP-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 UBE2L5PA0A1B0GUS4 154 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 UBE2L3P68036 154 aaKnown RBP-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 C9orf153Q5TBE3 101 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 RPL13AP3Q6NVV1 102 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 FXYD6Q9H0Q3 95 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 FAT3Q8TDW7 4589 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 VPS13DQ5THJ4 4388 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 ABCA13Q86UQ4 5058 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 ANKRD36A6QL64 1941 aa-0.52□□□□□ -2.49
SCFD1-218ENST00000556256 EPG5Q9HCE0 2579 aa-0.53□□□□□ -2.49
SCFD1-218ENST00000556256 M0R2T5 61 aa-0.53□□□□□ -2.49
SCFD1-218ENST00000556256 C10orf113Q5VZT2 155 aa-0.53□□□□□ -2.49
SCFD1-218ENST00000556256 FAM167A-AS1Q96KT0 104 aa-0.53□□□□□ -2.49
SCFD1-218ENST00000556256 SPG11Q96JI7 2443 aa-0.53□□□□□ -2.49
SCFD1-218ENST00000556256 LYSTQ99698 3801 aa-0.53□□□□□ -2.49
SCFD1-218ENST00000556256 ARHGEF12Q9NZN5 1544 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 GAPVD1Q14C86 1478 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 DEFB105AQ8NG35 78 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 UQCR10Q9UDW1 63 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 IER3IP1Q9Y5U9 82 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 PRRC2CQ9Y520 2896 aaKnown RBP-0.54□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms