RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 SPANXB1Q9NS25 103 aaPredicted RBP10.18□□□□□ -0.78
VPS33B-205ENST00000556096 COX11Q9Y6N1 276 aa10.18□□□□□ -0.78
VPS33B-205ENST00000556096 FXYD2P54710 66 aa10.17□□□□□ -0.78
VPS33B-205ENST00000556096 HUWE1Q7Z6Z7 4374 aaKnown RBP10.16□□□□□ -0.78
VPS33B-205ENST00000556096 IGLV5-39A0A0G2JS06 123 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 TMEM262E9PQX1 116 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 RBX1P62877 108 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 SPATA25Q9BR10 227 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 A0A0J9YWU9 116 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 PTTG1IPP53801 180 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 ZFAND6Q6FIF0 208 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 TM2D3Q9BRN9 247 aa10.16□□□□□ -0.78
VPS33B-205ENST00000556096 SRSF9Q13242 221 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS33B-205ENST00000556096 LELP1Q5T871 98 aa10.15□□□□□ -0.78
VPS33B-205ENST00000556096 B9D2Q9BPU9 175 aa10.15□□□□□ -0.78
VPS33B-205ENST00000556096 SMIM1B2RUZ4 78 aa10.14□□□□□ -0.79
VPS33B-205ENST00000556096 Q6ZTC4 211 aa10.14□□□□□ -0.79
VPS33B-205ENST00000556096 C10orf126Q8N4M7 172 aa10.14□□□□□ -0.79
VPS33B-205ENST00000556096 NDUFA12Q9UI09 145 aa10.14□□□□□ -0.79
VPS33B-205ENST00000556096 A0A0J9YXY3 114 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 K7EP13 123 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 SMIM13P0DJ93 91 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 Q6ZVH6 145 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 LINC00959A0A1B0GUT2 108 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 CCL25O15444 150 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 C11orf45Q8TAV5 145 aa10.13□□□□□ -0.79
VPS33B-205ENST00000556096 COL7A1Q02388 2944 aa10.12□□□□□ -0.79
VPS33B-205ENST00000556096 IGHV3OR16-9A0A0B4J2B5 98 aa10.11□□□□□ -0.79
VPS33B-205ENST00000556096 TMEM238C9JI98 176 aa10.11□□□□□ -0.79
VPS33B-205ENST00000556096 NDUFA1O15239 70 aa10.11□□□□□ -0.79
VPS33B-205ENST00000556096 IGKV3OR2-268A0A0C4DH90 116 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 TMEM238LA0A1B0GVL6 79 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 A0A1B0GWB2 263 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 C9orf118A6NHY6 69 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 A6NJY4 79 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 IGHV3-30P01768 117 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 IGHV3-30-5P0DP03 117 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 SS18Q15532 418 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 LYPD5Q6UWN5 251 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 NHP2Q9NX24 153 aaKnown RBP10.1□□□□□ -0.79
VPS33B-205ENST00000556096 TGP01266 2768 aa10.1□□□□□ -0.79
VPS33B-205ENST00000556096 NANOS2P60321 138 aaKnown RBP10.1□□□□□ -0.79
VPS33B-205ENST00000556096 A0A087WZ39 114 aa10.09□□□□□ -0.79
VPS33B-205ENST00000556096 TIMM17BO60830 172 aa10.09□□□□□ -0.79
VPS33B-205ENST00000556096 DEFB131BA0A096LNP1 70 aa10.08□□□□□ -0.8
VPS33B-205ENST00000556096 LITAFQ99732 161 aa10.08□□□□□ -0.8
VPS33B-205ENST00000556096 RAB37Q96AX2 223 aa10.07□□□□□ -0.8
VPS33B-205ENST00000556096 SPANXDQ9BXN6 97 aa10.07□□□□□ -0.8
VPS33B-205ENST00000556096 SPANXCQ9NY87 97 aa10.07□□□□□ -0.8
VPS33B-205ENST00000556096 ANGP03950 147 aaKnown RBP10.07□□□□□ -0.8
VPS33B-205ENST00000556096 LINC01561Q8N1V8 128 aa10.07□□□□□ -0.8
VPS33B-205ENST00000556096 LINC00269Q8N2A0 174 aa10.07□□□□□ -0.8
VPS33B-205ENST00000556096 ZNF625Q96I27 306 aaPredicted RBP10.07□□□□□ -0.8
VPS33B-205ENST00000556096 K7ERJ3 54 aa10.06□□□□□ -0.8
VPS33B-205ENST00000556096 Q9H8V8 135 aa10.06□□□□□ -0.8
VPS33B-205ENST00000556096 HERV-K104P63124 156 aa10.05□□□□□ -0.8
VPS33B-205ENST00000556096 REG3AQ06141 175 aa10.05□□□□□ -0.8
VPS33B-205ENST00000556096 VAMP3Q15836 100 aa10.05□□□□□ -0.8
VPS33B-205ENST00000556096 COX7B2Q8TF08 81 aa10.05□□□□□ -0.8
VPS33B-205ENST00000556096 H3BUT2 72 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 CIRBPQ14011 172 aaKnown RBP10.04□□□□□ -0.8
VPS33B-205ENST00000556096 MUSTN1Q8IVN3 82 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 TRAV10A0A0B4J240 114 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 XCL1P47992 114 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 RPL24P83731 157 aaKnown RBP10.04□□□□□ -0.8
VPS33B-205ENST00000556096 UBE2V1Q13404 147 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 MIAQ16674 131 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 ADAMTSL4-AS1Q5T5F5 129 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 CLPSL2Q6UWE3 100 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 CD164L2Q6UWJ8 174 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 C5orf38Q86SI9 138 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 Q8N3U1 123 aa10.04□□□□□ -0.8
VPS33B-205ENST00000556096 NHLRC4P0CG21 123 aaPredicted RBP10.03□□□□□ -0.8
VPS33B-205ENST00000556096 PRR34Q9NV39 138 aa10.03□□□□□ -0.8
VPS33B-205ENST00000556096 IGLL5B9A064 214 aa10.02□□□□□ -0.8
VPS33B-205ENST00000556096 IFITM1P13164 125 aa10.02□□□□□ -0.8
VPS33B-205ENST00000556096 CHCHD10Q8WYQ3 142 aaPredicted RBP10.02□□□□□ -0.8
VPS33B-205ENST00000556096 A0A1W2PPM0 123 aa10.02□□□□□ -0.81
VPS33B-205ENST00000556096 A4D1N5 150 aa10.01□□□□□ -0.81
VPS33B-205ENST00000556096 PRSS2P07478 247 aa10.01□□□□□ -0.81
VPS33B-205ENST00000556096 CFC1BP0CG36 223 aa10.01□□□□□ -0.81
VPS33B-205ENST00000556096 CFC1P0CG37 223 aa10.01□□□□□ -0.81
VPS33B-205ENST00000556096 ESRGQ1W209 222 aa10.01□□□□□ -0.81
VPS33B-205ENST00000556096 SFTA2Q6UW10 78 aa10.01□□□□□ -0.81
VPS33B-205ENST00000556096 TRAV16A0A0A6YYK6 109 aaPredicted RBP10□□□□□ -0.81
VPS33B-205ENST00000556096 C15orf53Q8NAA6 179 aa10□□□□□ -0.81
VPS33B-205ENST00000556096 NAA38Q9BRA0 125 aaKnown RBP10□□□□□ -0.81
VPS33B-205ENST00000556096 TOMM7Q9P0U1 55 aa10□□□□□ -0.81
VPS33B-205ENST00000556096 STAB2Q8WWQ8 2551 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 APOMO95445 188 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 KLK12Q9UKR0 248 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 A0A0B4J2C4 111 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 COX7A2LO14548 114 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 FABP2P12104 132 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 WFDC10BQ8IUB3 73 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 Q8IZM0 81 aa9.99□□□□□ -0.81
VPS33B-205ENST00000556096 FOXI1Q12951 378 aa9.98□□□□□ -0.81
VPS33B-205ENST00000556096 MEIG1Q5JSS6 88 aa9.98□□□□□ -0.81
VPS33B-205ENST00000556096 ENHOQ6UWT2 76 aa9.98□□□□□ -0.81
VPS33B-205ENST00000556096 COPS9Q8WXC6 57 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms