RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 DPH3Q96FX2 82 aa13.2□□□□□ -0.3
CCDC88C-210ENST00000555995 LINC00474Q9P2X8 69 aa13.2□□□□□ -0.3
CCDC88C-210ENST00000555995 TGIF2-C20orf24A0A0A6YYL0 155 aa13.19□□□□□ -0.3
CCDC88C-210ENST00000555995 COX6A2Q02221 97 aa13.19□□□□□ -0.3
CCDC88C-210ENST00000555995 PAPPA-AS1Q5QFB9 102 aa13.19□□□□□ -0.3
CCDC88C-210ENST00000555995 C2orf88Q9BSF0 95 aa13.19□□□□□ -0.3
CCDC88C-210ENST00000555995 IGLV4-3A0A075B6K6 122 aa13.18□□□□□ -0.3
CCDC88C-210ENST00000555995 LINC01549A6NIU2 74 aa13.18□□□□□ -0.3
CCDC88C-210ENST00000555995 C5orf38Q86SI9 138 aa13.18□□□□□ -0.3
CCDC88C-210ENST00000555995 FAM104AQ969W3 186 aa13.18□□□□□ -0.3
CCDC88C-210ENST00000555995 C2orf48Q96LS8 159 aa13.18□□□□□ -0.3
CCDC88C-210ENST00000555995 SRRM2Q9UQ35 2752 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-210ENST00000555995 F8WDY8 70 aa13.17□□□□□ -0.3
CCDC88C-210ENST00000555995 OPRPNQ99935 248 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-210ENST00000555995 IGLV4-69A0A075B6H9 119 aa13.16□□□□□ -0.3
CCDC88C-210ENST00000555995 PANO1I0J062 215 aa13.16□□□□□ -0.3
CCDC88C-210ENST00000555995 SNAPINO95295 136 aa13.16□□□□□ -0.3
CCDC88C-210ENST00000555995 KIAA1644Q3SXP7 199 aa13.16□□□□□ -0.3
CCDC88C-210ENST00000555995 SVBPQ8N300 66 aa13.16□□□□□ -0.3
CCDC88C-210ENST00000555995 CAMK2N2Q96S95 79 aa13.16□□□□□ -0.3
CCDC88C-210ENST00000555995 IGHV3OR16-9A0A0B4J2B5 98 aa13.15□□□□□ -0.3
CCDC88C-210ENST00000555995 RPL37AP61513 92 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-210ENST00000555995 SPAG11BQ08648 103 aa13.15□□□□□ -0.3
CCDC88C-210ENST00000555995 PRSS3P2Q8NHM4 247 aa13.15□□□□□ -0.3
CCDC88C-210ENST00000555995 A0A087WYN8 130 aa13.14□□□□□ -0.31
CCDC88C-210ENST00000555995 APOC3P02656 99 aa13.14□□□□□ -0.31
CCDC88C-210ENST00000555995 CHTF8P0CG12 524 aa13.14□□□□□ -0.31
CCDC88C-210ENST00000555995 LINC00526Q96FQ7 95 aa13.14□□□□□ -0.31
CCDC88C-210ENST00000555995 VCX2Q9H322 139 aa13.14□□□□□ -0.31
CCDC88C-210ENST00000555995 PLAC8Q9NZF1 115 aa13.14□□□□□ -0.31
CCDC88C-210ENST00000555995 IGKV2-24A0A0C4DH68 120 aa13.13□□□□□ -0.31
CCDC88C-210ENST00000555995 MAJINQ3KP22 176 aa13.13□□□□□ -0.31
CCDC88C-210ENST00000555995 ORAOV1Q8WV07 137 aa13.13□□□□□ -0.31
CCDC88C-210ENST00000555995 TIMM17AQ99595 171 aa13.13□□□□□ -0.31
CCDC88C-210ENST00000555995 MRPL18Q9H0U6 180 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-210ENST00000555995 LOC107984640A0A0U1RRK4 108 aa13.12□□□□□ -0.31
CCDC88C-210ENST00000555995 FABP9Q0Z7S8 132 aa13.12□□□□□ -0.31
CCDC88C-210ENST00000555995 ALKBH7Q9BT30 221 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-210ENST00000555995 A0A087WZ39 114 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 SEC11AP67812 179 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 RNF151Q2KHN1 245 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 LINC01561Q8N1V8 128 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 C7orf33Q8WU49 177 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 TOMM6Q96B49 74 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 AMELXQ99217 191 aa13.11□□□□□ -0.31
CCDC88C-210ENST00000555995 A0A096LNI7 61 aa13.1□□□□□ -0.31
CCDC88C-210ENST00000555995 IGIPA6NJ69 53 aa13.1□□□□□ -0.31
CCDC88C-210ENST00000555995 UBE2D1P51668 147 aa13.1□□□□□ -0.31
CCDC88C-210ENST00000555995 LINC00242Q5T6M2 205 aa13.1□□□□□ -0.31
CCDC88C-210ENST00000555995 Q6ZRU5 148 aa13.1□□□□□ -0.31
CCDC88C-210ENST00000555995 NDUFA1O15239 70 aa13.09□□□□□ -0.31
CCDC88C-210ENST00000555995 STPG4Q8N801 248 aa13.09□□□□□ -0.31
CCDC88C-210ENST00000555995 SMCO4Q9NRQ5 59 aa13.09□□□□□ -0.31
CCDC88C-210ENST00000555995 LINC01546A6NGU7 62 aa13.08□□□□□ -0.32
CCDC88C-210ENST00000555995 KRTAP10-4P60372 401 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-210ENST00000555995 FA2HQ7L5A8 372 aa13.08□□□□□ -0.32
CCDC88C-210ENST00000555995 ERASQ7Z444 233 aa13.08□□□□□ -0.32
CCDC88C-210ENST00000555995 MRPL35Q9NZE8 188 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-210ENST00000555995 FAM19A3Q7Z5A8 133 aa13.07□□□□□ -0.32
CCDC88C-210ENST00000555995 FLG2Q5D862 2391 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-210ENST00000555995 PTTG1IPP53801 180 aa13.06□□□□□ -0.32
CCDC88C-210ENST00000555995 HERVK_113P63121 156 aa13.06□□□□□ -0.32
CCDC88C-210ENST00000555995 LINC00173Q6ZV60 143 aa13.06□□□□□ -0.32
CCDC88C-210ENST00000555995 SCGB3A1Q96QR1 104 aa13.06□□□□□ -0.32
CCDC88C-210ENST00000555995 TRAPPC1Q9Y5R8 145 aa13.05□□□□□ -0.32
CCDC88C-210ENST00000555995 RPL18AQ02543 176 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-210ENST00000555995 GAGE2BQ13066 116 aa13.03□□□□□ -0.32
CCDC88C-210ENST00000555995 GEMIN7Q9H840 131 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-210ENST00000555995 DMBT1Q9UGM3 2413 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-210ENST00000555995 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-210ENST00000555995 PRSS2P07478 247 aa13.01□□□□□ -0.33
CCDC88C-210ENST00000555995 PACRGQ96M98 296 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-210ENST00000555995 MYCBP2O75592 4640 aa13.01□□□□□ -0.33
CCDC88C-210ENST00000555995 TRBV30A0A0K0K1B3 111 aa13□□□□□ -0.33
CCDC88C-210ENST00000555995 KRTAP29-1A8MX34 341 aaPredicted RBP13□□□□□ -0.33
CCDC88C-210ENST00000555995 J3QL48 77 aa13□□□□□ -0.33
CCDC88C-210ENST00000555995 ZC2HC1BQ5TFG8 222 aa13□□□□□ -0.33
CCDC88C-210ENST00000555995 RAB5BP61020 215 aa12.99□□□□□ -0.33
CCDC88C-210ENST00000555995 TLX1NBP0CAT3 122 aa12.98□□□□□ -0.33
CCDC88C-210ENST00000555995 KIAA0087Q14695 138 aa12.98□□□□□ -0.33
CCDC88C-210ENST00000555995 C18orf32Q8TCD1 76 aa12.98□□□□□ -0.33
CCDC88C-210ENST00000555995 OXTP01178 125 aa12.97□□□□□ -0.33
CCDC88C-210ENST00000555995 UNQ6190/PRO20217Q6UXQ8 127 aa12.97□□□□□ -0.33
CCDC88C-210ENST00000555995 Q8IZM0 81 aa12.97□□□□□ -0.33
CCDC88C-210ENST00000555995 PKHD1L1Q86WI1 4243 aa12.96□□□□□ -0.33
CCDC88C-210ENST00000555995 TINCRA0A1B0GVN0 87 aa12.96□□□□□ -0.33
CCDC88C-210ENST00000555995 LINC00614P0C842 121 aa12.96□□□□□ -0.33
CCDC88C-210ENST00000555995 PMVKQ15126 192 aa12.96□□□□□ -0.33
CCDC88C-210ENST00000555995 C6orf48Q9UBA6 75 aa12.96□□□□□ -0.33
CCDC88C-210ENST00000555995 A0A0J9YXV3 536 aa12.95□□□□□ -0.34
CCDC88C-210ENST00000555995 CKS1BP61024 79 aa12.95□□□□□ -0.34
CCDC88C-210ENST00000555995 LINC00469Q8N7U9 141 aa12.95□□□□□ -0.34
CCDC88C-210ENST00000555995 CDKN2A-AS1Q9UH64 79 aa12.95□□□□□ -0.34
CCDC88C-210ENST00000555995 HBDP02042 147 aa12.94□□□□□ -0.34
CCDC88C-210ENST00000555995 CXCL5P42830 114 aa12.94□□□□□ -0.34
CCDC88C-210ENST00000555995 C6orf226Q5I0X4 101 aa12.94□□□□□ -0.34
CCDC88C-210ENST00000555995 C10orf25Q5T742 122 aa12.94□□□□□ -0.34
CCDC88C-210ENST00000555995 TOMM7Q9P0U1 55 aa12.94□□□□□ -0.34
CCDC88C-210ENST00000555995 PRR3P79522 188 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-210ENST00000555995 CST9LQ9H4G1 147 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms