RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 COX17Q14061 63 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 LINC01600Q96MT4 127 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 PMCHL2Q9BQD1 86 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 SNHG12Q9BXW3 62 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 CRIPTQ9P021 101 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 CACFD1Q9UGQ2 172 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 BTAF1O14981 1849 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 NLRP1Q9C000 1473 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 NRXN1Q9ULB1 1477 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 CELSR2Q9HCU4 2923 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 LOC285095A0A1B0GVY8 99 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 H3BQ15 152 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 H7BZZ5 65 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 MGPP08493 103 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 TP53AIP1Q9HCN2 124 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 HIVEP3Q5T1R4 2406 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 TOPAZ1Q8N9V7 1692 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 CHD1O14646 1710 aa0.1□□□□□ -2.39
SCFD1-217ENST00000555953 FAM208BQ5VWN6 2430 aa0.09□□□□□ -2.39
SCFD1-217ENST00000555953 ARHGEF12Q9NZN5 1544 aa0.09□□□□□ -2.39
SCFD1-217ENST00000555953 FXYD6-FXYD2A0A087WZ82 144 aa0.09□□□□□ -2.4
SCFD1-217ENST00000555953 TMEM263Q8WUH6 116 aaKnown RBP0.09□□□□□ -2.4
SCFD1-217ENST00000555953 CSMD3Q7Z407 3707 aa0.09□□□□□ -2.4
SCFD1-217ENST00000555953 LRRC37A2A6NM11 1700 aa0.09□□□□□ -2.4
SCFD1-217ENST00000555953 C1orf167Q5SNV9 1468 aa0.09□□□□□ -2.4
SCFD1-217ENST00000555953 BIVM-ERCC5R4GMW8 1640 aa0.09□□□□□ -2.4
SCFD1-217ENST00000555953 KDM3BQ7LBC6 1761 aa0.09□□□□□ -2.4
SCFD1-217ENST00000555953 PLXNB2O15031 1838 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 PRDM15P57071 1507 aaPredicted RBP0.08□□□□□ -2.4
SCFD1-217ENST00000555953 CACNA1CQ13936 2221 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 CELSR1Q9NYQ6 3014 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 A0A0D9SFI3 127 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 A0A1B0GWA3 101 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 C7orf77A4D0Y5 90 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 M0R143 59 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 COX6CP09669 75 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 Q8IZM0 81 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 ACBD7Q8N6N7 88 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 FAIMQ9NVQ4 179 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 CHD9Q3L8U1 2897 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 HRNRQ86YZ3 2850 aaPredicted RBP0.08□□□□□ -2.4
SCFD1-217ENST00000555953 DMBT1Q9UGM3 2413 aaPredicted RBP0.08□□□□□ -2.4
SCFD1-217ENST00000555953 PAPPAQ13219 1627 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 OTOGQ6ZRI0 2925 aa0.08□□□□□ -2.4
SCFD1-217ENST00000555953 ABCA3Q99758 1704 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 UNC79Q9P2D8 2635 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 DIP2CQ9Y2E4 1556 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 TRBV6-1A0A0K0K1D8 114 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 DEFB107AQ8IZN7 70 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 TRGV9Q99603 122 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 MAGI1Q96QZ7 1491 aaPredicted RBP0.07□□□□□ -2.4
SCFD1-217ENST00000555953 MLH3Q9UHC1 1453 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 TULP4Q9NRJ4 1543 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 PI4KAP42356 2102 aa0.07□□□□□ -2.4
SCFD1-217ENST00000555953 NCOR1O75376 2440 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 WNK3Q9BYP7 1800 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 PLEKHH2Q8IVE3 1493 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 TRBV25-1A0A075B6N4 114 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 CFDP00746 253 aaPredicted RBP0.06□□□□□ -2.4
SCFD1-217ENST00000555953 SAA2P0DJI9 122 aaPredicted RBP0.06□□□□□ -2.4
SCFD1-217ENST00000555953 SPRR1AP35321 89 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 FAUP35544 74 aaKnown RBP0.06□□□□□ -2.4
SCFD1-217ENST00000555953 KRTDAPP60985 99 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 WFDC2Q14508 124 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 PSENENQ9NZ42 101 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 HIGD1BQ9P298 99 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 SPCS1Q9Y6A9 102 aa0.06□□□□□ -2.4
SCFD1-217ENST00000555953 NHSL1Q5SYE7 1610 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 RAPGEF6Q8TEU7 1601 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 SPTBN2O15020 2390 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 POLA1P09884 1462 aaPredicted RBP0.05□□□□□ -2.4
SCFD1-217ENST00000555953 MRC2Q9UBG0 1479 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 UBR5O95071 2799 aaPredicted RBP0.05□□□□□ -2.4
SCFD1-217ENST00000555953 SLIT1O75093 1534 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 PKIAP61925 76 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 COL5A1-AS1Q5SY13 56 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 SERP2Q8N6R1 65 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 C20orf78Q9BR46 151 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 DPY30Q9C005 99 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 AP4S1Q9Y587 144 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 SBF2Q86WG5 1849 aa0.05□□□□□ -2.4
SCFD1-217ENST00000555953 SYS1-DBNDD2H3BUS1 97 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 K7EQZ3 153 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 PRM1P04553 51 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 SPRR1BP22528 89 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 KLK9Q2XQG4 91 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 PSMG4Q5JS54 123 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 DEFB123Q8N688 67 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 VAMP8Q9BV40 100 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 U3KQA8 63 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 PPRC1Q5VV67 1664 aaKnown RBP0.04□□□□□ -2.4
SCFD1-217ENST00000555953 ZNF292O60281 2723 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 CCNB3Q8WWL7 1395 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 MARF1Q9Y4F3 1742 aaKnown RBP0.04□□□□□ -2.4
SCFD1-217ENST00000555953 VPS8Q8N3P4 1428 aa0.04□□□□□ -2.4
SCFD1-217ENST00000555953 TEX14Q8IWB6 1497 aa0.03□□□□□ -2.4
SCFD1-217ENST00000555953 TNXBP22105 4242 aa0.03□□□□□ -2.4
SCFD1-217ENST00000555953 ATOX1O00244 68 aa0.03□□□□□ -2.4
SCFD1-217ENST00000555953 S100A8P05109 93 aa0.03□□□□□ -2.4
SCFD1-217ENST00000555953 DEFB109BQ30KR1 87 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms