RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 ZNF720Q7Z2F6 126 aa1.56□□□□□ -2.16
VRK1-205ENST00000555402 LINC01558Q9Y6Z2 57 aa1.56□□□□□ -2.16
VRK1-205ENST00000555402 HELZ2Q9BYK8 2649 aaKnown RBP1.55□□□□□ -2.16
VRK1-205ENST00000555402 C10orf142B7Z368 130 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 F2Z2F3 143 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 SMIM11AP58511 58 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 ADIRFQ15847 76 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 ETDBQ3ZM63 59 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 CFAP126Q5VTH2 177 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 ZMYM4Q5VZL5 1548 aa1.55□□□□□ -2.16
VRK1-205ENST00000555402 F8WEM9 126 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 M0R3E3 92 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 MGPP08493 103 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 COX17Q14061 63 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 SPINK13Q1W4C9 94 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 SMIM4Q8WVI0 70 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 PRR15LQ9BU68 103 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 ST20Q9HBF5 79 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 TMEM131LA2VDJ0 1609 aa1.54□□□□□ -2.16
VRK1-205ENST00000555402 FLG2Q5D862 2391 aaPredicted RBP1.54□□□□□ -2.16
VRK1-205ENST00000555402 A0A1B0GWA3 101 aa1.53□□□□□ -2.16
VRK1-205ENST00000555402 BCE1O60756 84 aa1.53□□□□□ -2.16
VRK1-205ENST00000555402 NCOA6Q14686 2063 aaPredicted RBP1.53□□□□□ -2.16
VRK1-205ENST00000555402 PPRC1Q5VV67 1664 aaKnown RBP1.53□□□□□ -2.16
VRK1-205ENST00000555402 SMIM11BQ8TCY0 68 aa1.53□□□□□ -2.16
VRK1-205ENST00000555402 RAPGEF6Q8TEU7 1601 aa1.53□□□□□ -2.16
VRK1-205ENST00000555402 LRRC37A2A6NM11 1700 aa1.52□□□□□ -2.17
VRK1-205ENST00000555402 CFAP74Q9C0B2 1584 aa1.52□□□□□ -2.17
VRK1-205ENST00000555402 CCDC88BA6NC98 1476 aa1.52□□□□□ -2.17
VRK1-205ENST00000555402 A0A096LNT2 108 aa1.52□□□□□ -2.17
VRK1-205ENST00000555402 SNRPFP62306 86 aaKnown RBP1.52□□□□□ -2.17
VRK1-205ENST00000555402 PLAC4Q8WY50 150 aa1.52□□□□□ -2.17
VRK1-205ENST00000555402 SSC5DA1L4H1 1573 aa1.51□□□□□ -2.17
VRK1-205ENST00000555402 A0A087WVE0 104 aa1.51□□□□□ -2.17
VRK1-205ENST00000555402 KANTRA0A1W2PQU2 76 aa1.51□□□□□ -2.17
VRK1-205ENST00000555402 C7orf77A4D0Y5 90 aa1.51□□□□□ -2.17
VRK1-205ENST00000555402 RPL37P61927 97 aaKnown RBP1.51□□□□□ -2.17
VRK1-205ENST00000555402 NMSQ5H8A3 153 aa1.51□□□□□ -2.17
VRK1-205ENST00000555402 KNDC1Q76NI1 1749 aa1.51□□□□□ -2.17
VRK1-205ENST00000555402 GVQW2A0A096LPI5 108 aaPredicted RBP1.5□□□□□ -2.17
VRK1-205ENST00000555402 HMGN2P05204 90 aaKnown RBP1.5□□□□□ -2.17
VRK1-205ENST00000555402 WFDC2Q14508 124 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 MYO7BQ6PIF6 2116 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 FDCSPQ8NFU4 85 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 C5P01031 1676 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 PTPN23Q9H3S7 1636 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 ABCA8O94911 1581 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 NEXMIFQ5QGS0 1516 aa1.5□□□□□ -2.17
VRK1-205ENST00000555402 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.5□□□□□ -2.17
VRK1-205ENST00000555402 CRYBG1Q9Y4K1 1723 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 SHPRHQ149N8 1683 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 ARMS2P0C7Q2 107 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 SPINT3P49223 89 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 Q6ZRX8 168 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 PSENENQ9NZ42 101 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 KCPQ6ZWJ8 1503 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 LTN1O94822 1766 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 CCDC141Q6ZP82 1450 aa1.49□□□□□ -2.17
VRK1-205ENST00000555402 IQGAP3Q86VI3 1631 aa1.48□□□□□ -2.17
VRK1-205ENST00000555402 ALKQ9UM73 1620 aa1.48□□□□□ -2.17
VRK1-205ENST00000555402 GCHFRP30047 84 aa1.48□□□□□ -2.17
VRK1-205ENST00000555402 LINC00643Q86TS7 51 aa1.48□□□□□ -2.17
VRK1-205ENST00000555402 CUX1P39880 1505 aa1.48□□□□□ -2.17
VRK1-205ENST00000555402 MED13LQ71F56 2210 aa1.48□□□□□ -2.17
VRK1-205ENST00000555402 TARBP1Q13395 1621 aaKnown RBP1.48□□□□□ -2.17
VRK1-205ENST00000555402 ERICH3Q5RHP9 1530 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 MYO5CQ9NQX4 1742 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 G3V318 75 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 LEPROTL1O95214 131 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 ACYP1P07311 99 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 HMGN3Q15651 99 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 BVES-AS1Q5T3Y7 98 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 SPRR4Q96PI1 79 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 LINC00472Q9H8W2 130 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 ANKARQ7Z5J8 1434 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 KDM3BQ7LBC6 1761 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 ADAMTS12P58397 1594 aa1.47□□□□□ -2.17
VRK1-205ENST00000555402 ROS1P08922 2347 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 ABCC1P33527 1531 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 ZC3H13Q5T200 1668 aaKnown RBP1.46□□□□□ -2.18
VRK1-205ENST00000555402 LRRC9Q6ZRR7 1453 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 IQCF6A8MYZ5 107 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 D6R8Y8 96 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 H3BUT2 72 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 MUSTN1Q8IVN3 82 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 LINC01600Q96MT4 127 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 RGPD8O14715 1765 aaPredicted RBP1.46□□□□□ -2.18
VRK1-205ENST00000555402 RGPD5Q99666 1765 aa1.46□□□□□ -2.18
VRK1-205ENST00000555402 KMT2BQ9UMN6 2715 aaPredicted RBP1.46□□□□□ -2.18
VRK1-205ENST00000555402 C1orf167Q5SNV9 1468 aa1.45□□□□□ -2.18
VRK1-205ENST00000555402 PAPPA2Q9BXP8 1791 aa1.45□□□□□ -2.18
VRK1-205ENST00000555402 K7EIL1 84 aa1.45□□□□□ -2.18
VRK1-205ENST00000555402 IGLC2P0DOY2 106 aa1.45□□□□□ -2.18
VRK1-205ENST00000555402 IGLC3P0DOY3 106 aa1.45□□□□□ -2.18
VRK1-205ENST00000555402 XRN1Q8IZH2 1706 aaKnown RBP1.45□□□□□ -2.18
VRK1-205ENST00000555402 UGGT2Q9NYU1 1516 aa1.45□□□□□ -2.18
VRK1-205ENST00000555402 ASCC3Q8N3C0 2202 aaKnown RBP1.44□□□□□ -2.18
VRK1-205ENST00000555402 NHSL1Q5SYE7 1610 aa1.44□□□□□ -2.18
VRK1-205ENST00000555402 PKD1L3Q7Z443 1732 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms