RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 IGHV1-58A0A0C4DH39 117 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 LINC00158P58513 81 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 LINC00242Q5T6M2 205 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 VSIG2Q96IQ7 327 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 OR13C6PQ8NH95 151 aa3.96□□□□□ -1.77
LIMA1-215ENST00000552823 C19orf73Q9NVV2 129 aa3.96□□□□□ -1.77
LIMA1-215ENST00000552823 TMEM238C9JI98 176 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 TAL2Q16559 108 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 AMELXQ99217 191 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 C1QTNF4Q9BXJ3 329 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 TRAV4A0A0B4J268 109 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 PAX4O43316 350 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 UBE2D1P51668 147 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 RPL32P62910 135 aaKnown RBP3.96□□□□□ -1.78
LIMA1-215ENST00000552823 BEAN1Q3B7T3 259 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 MRAPQ8TCY5 172 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 C16orf74Q96GX8 76 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 SPANXA1Q9NS26 97 aa3.96□□□□□ -1.78
LIMA1-215ENST00000552823 RPL13AP40429 203 aaKnown RBP3.95□□□□□ -1.78
LIMA1-215ENST00000552823 UBE2D3P61077 147 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 DAD1P61803 113 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 UBE2D2P62837 147 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 TRAV26-1A0A087WT03 109 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 MRPS36P82909 103 aaKnown RBP3.95□□□□□ -1.78
LIMA1-215ENST00000552823 FHL2Q14192 279 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 C2orf82Q6UX34 121 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 ATP6V0E2Q8NHE4 81 aa3.95□□□□□ -1.78
LIMA1-215ENST00000552823 PLAC8L1A1L4L8 177 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 ANGP03950 147 aaKnown RBP3.94□□□□□ -1.78
LIMA1-215ENST00000552823 CELA1Q9UNI1 258 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 IGHV3-33P01772 117 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 CIRBPQ14011 172 aaKnown RBP3.94□□□□□ -1.78
LIMA1-215ENST00000552823 C6orf226Q5I0X4 101 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 CDC42SE2Q9NRR3 84 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 IGHV4-28A0A0C4DH34 117 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 TINCRA0A1B0GVN0 87 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 SMCPP49901 116 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-215ENST00000552823 NTN5Q8WTR8 489 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-215ENST00000552823 C16orf95Q9H693 158 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 PYGO1Q9Y3Y4 419 aa3.94□□□□□ -1.78
LIMA1-215ENST00000552823 STAB2Q8WWQ8 2551 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 TRIAP1O43715 76 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 PRR3P79522 188 aaKnown RBP3.93□□□□□ -1.78
LIMA1-215ENST00000552823 DAZ2Q13117 558 aaKnown RBP3.93□□□□□ -1.78
LIMA1-215ENST00000552823 DAZ4Q86SG3 579 aaKnown RBP3.93□□□□□ -1.78
LIMA1-215ENST00000552823 LINC00269Q8N2A0 174 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 CSNK1G2-AS1Q8NCQ2 148 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 DAZ3Q9NR90 486 aaKnown RBP3.93□□□□□ -1.78
LIMA1-215ENST00000552823 SPANXB1Q9NS25 103 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-215ENST00000552823 TRBV6-8A0A0A6YYG3 113 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 A8MTW9 85 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 G3V4G9 280 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 HERVK_113P63121 156 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 C9orf116Q5BN46 136 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-215ENST00000552823 XP32Q5T750 250 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 MIR7-3HGQ8N6C7 128 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 C3orf56Q8N813 242 aa3.93□□□□□ -1.78
LIMA1-215ENST00000552823 SMIM1B2RUZ4 78 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 SLC25A20O43772 301 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 DEFB121Q5J5C9 76 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 J3QR89 54 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 C9orf66Q5T8R8 295 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 SOSTDC1Q6X4U4 206 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 ANKRD29Q8N6D5 301 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 KLK12Q9UKR0 248 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 F8W1H4 67 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 ATP5G1P05496 136 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 IGHV4-30-4P0DP06 118 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 CMC4P56277 68 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-215ENST00000552823 Q9HAA7 133 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 X6R8D5 127 aa3.92□□□□□ -1.78
LIMA1-215ENST00000552823 TRBV10-1A0A0K0K1A3 114 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 TEX49A0A1B0GTD5 131 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 LINC00308Q8TCZ7 52 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 C1orf43Q9BWL3 253 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-215ENST00000552823 GAGE12HA6NDE8 117 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 COX6CP09669 75 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 MALP21145 153 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 MIAQ16674 131 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 ZFAND6Q6FIF0 208 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 COX7B2Q8TF08 81 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 UBE2WQ96B02 151 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 ICOSQ9Y6W8 199 aa3.91□□□□□ -1.78
LIMA1-215ENST00000552823 TRBV6-4A0A1B0GX49 114 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 LITAFQ99732 161 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 PRO0255Q9UI72 69 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 CRYBA4P53673 196 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 FOXI1Q12951 378 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 LINC01620Q4KN68 170 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 LYRM7Q5U5X0 104 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 PRO0461Q9UI25 63 aa3.9□□□□□ -1.78
LIMA1-215ENST00000552823 CYSRT1A8MQ03 144 aa3.9□□□□□ -1.79
LIMA1-215ENST00000552823 SLPIP03973 132 aa3.9□□□□□ -1.79
LIMA1-215ENST00000552823 TIRAPP58753 221 aa3.9□□□□□ -1.79
LIMA1-215ENST00000552823 C6orf223Q8N319 242 aa3.9□□□□□ -1.79
LIMA1-215ENST00000552823 CARD19Q96LW7 228 aa3.9□□□□□ -1.79
LIMA1-215ENST00000552823 LINC00959A0A1B0GUT2 108 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 CKS1BP61024 79 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 SS18Q15532 418 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms