RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 K7EQG2 157 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 DSCR9P59020 149 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 C3orf22Q8N5N4 141 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 K7EMT4 169 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 BAALC-AS2P0C853 105 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 ZNF415Q09FC8 603 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 LINC00242Q5T6M2 205 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 SDIM1Q6ZPB5 146 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 KIR2DL5BQ8NHK3 375 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 GCN1Q92616 2671 aaKnown RBP3.48□□□□□ -1.85
LIMA1-214ENST00000552783 A0A087WVE0 104 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 COX7A2LO14548 114 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 NDUFA1O15239 70 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 GAGE2AQ6NT46 116 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 CSDC2Q9Y534 153 aaKnown RBP3.48□□□□□ -1.85
LIMA1-214ENST00000552783 FLNBO75369 2602 aaKnown RBP3.48□□□□□ -1.85
LIMA1-214ENST00000552783 HELZ2Q9BYK8 2649 aaKnown RBP3.48□□□□□ -1.85
LIMA1-214ENST00000552783 hADV29S1A0JD25 119 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 UBE2L6O14933 153 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 OXLD1Q5BKU9 147 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 YAE1D1Q9NRH1 226 aa3.48□□□□□ -1.85
LIMA1-214ENST00000552783 SMIM1B2RUZ4 78 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 C5orf38Q86SI9 138 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 TMEM126AQ9H061 195 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 C11orf68Q9H3H3 251 aaKnown RBP3.47□□□□□ -1.85
LIMA1-214ENST00000552783 A0A087WYN8 130 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 IGKV3D-7A0A0C4DH55 119 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 OXTP01178 125 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 INSP01308 110 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 FAM19A5Q7Z5A7 132 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-214ENST00000552783 LINC00643Q86TS7 51 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 LINC00526Q96FQ7 95 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 EDA2RQ9HAV5 297 aa3.47□□□□□ -1.85
LIMA1-214ENST00000552783 IGLV5-45A0A087WSX0 123 aa3.46□□□□□ -1.85
LIMA1-214ENST00000552783 IGLV5-39A0A0G2JS06 123 aa3.46□□□□□ -1.85
LIMA1-214ENST00000552783 ATP5G1P05496 136 aa3.46□□□□□ -1.85
LIMA1-214ENST00000552783 LINC00337Q8N6G1 96 aa3.46□□□□□ -1.85
LIMA1-214ENST00000552783 C14orf132Q9NPU4 83 aa3.46□□□□□ -1.85
LIMA1-214ENST00000552783 IGKV2-28A0A075B6P5 120 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 UQCRQO14949 82 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 TIMM17BO60830 172 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 IGKV2D-28P01615 120 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 NTM-AS1Q6ZSK4 140 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 DNAJC30Q96LL9 226 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 DEFB130BP0DP73 79 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 DEFB130AP0DP74 79 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 CIRBPQ14011 172 aaKnown RBP3.46□□□□□ -1.86
LIMA1-214ENST00000552783 PRIMA1Q86XR5 153 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 IMUPQ9GZP8 106 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 SPANXA1Q9NS26 97 aa3.46□□□□□ -1.86
LIMA1-214ENST00000552783 TRGV4A0A0C4DH28 118 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 F5H768 121 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 SLPIP03973 132 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 C11orf72Q8NBR9 251 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 WFDC11Q8NEX6 87 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 WFDC10AQ9H1F0 79 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 ZNF702PQ9H963 129 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 NOP10Q9NPE3 64 aaKnown RBP3.45□□□□□ -1.86
LIMA1-214ENST00000552783 LINC00846Q9NV44 126 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 ATRQ13535 2644 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 ITPR2Q14571 2701 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 J3QLI3 93 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 IGHV4-31P0DP07 118 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 COX7CP15954 63 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 HIST1H4AP62805 103 aaKnown RBP3.45□□□□□ -1.86
LIMA1-214ENST00000552783 RPL36AP83881 106 aaKnown RBP3.45□□□□□ -1.86
LIMA1-214ENST00000552783 DEFB113Q30KQ7 82 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 RPL36ALQ969Q0 106 aaKnown RBP3.45□□□□□ -1.86
LIMA1-214ENST00000552783 MAP6D1Q9H9H5 199 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 A0A096LPF7 62 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 ACYP1P07311 99 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 WFDC9Q8NEX5 89 aa3.45□□□□□ -1.86
LIMA1-214ENST00000552783 BBC3Q96PG8 261 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-214ENST00000552783 CCL24O00175 119 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 NCR3O14931 201 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 TRACP01848 142 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 MALP21145 153 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 Q6YL49 198 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 Q6ZTI0 123 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 LINC01561Q8N1V8 128 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 DSCR8Q96T75 97 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 PF4P02776 101 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 HTN3P15516 51 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 OR13C6PQ8NH95 151 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 PLA2G2AP14555 144 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 HILS1P60008 231 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 CLPSL2Q6UWE3 100 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 MIR7-3HGQ8N6C7 128 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 SMIM11BQ8TCY0 68 aa3.44□□□□□ -1.86
LIMA1-214ENST00000552783 A0A1B0GX51 115 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 SMIM9A6NGZ8 99 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 LOC100131303A0A0U1RQF7 123 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 CRYGAP11844 174 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 PFN2P35080 140 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 SS18Q15532 418 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 DEFB114Q30KQ6 69 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 UPK3BQ9BT76 320 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 ESM1Q9NQ30 184 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 RNASE1P07998 156 aaKnown RBP3.43□□□□□ -1.86
LIMA1-214ENST00000552783 LINC00158P58513 81 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms