RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SMIM1B2RUZ4 78 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 COX7A2LO14548 114 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 DSCR9P59020 149 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 NTM-AS1Q6ZSK4 140 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 LINC01356Q8N9X3 169 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 VPREB3Q9UKI3 123 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 SONP18583 2426 aaKnown RBP3.87□□□□□ -1.79
LIMA1-212ENST00000552491 CR1P17927 2039 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 ABCA12Q86UK0 2595 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 SMCR5Q8TEV8 140 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 FAM218AQ96MZ4 157 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 BBC3Q96PG8 261 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-212ENST00000552491 CHCHD5Q9BSY4 110 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 XCL2Q9UBD3 114 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 SETD2Q9BYW2 2564 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-212ENST00000552491 TRAV13-1A0A0B4J241 112 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 J3QLI3 93 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 Q96MF0 132 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 IMUPQ9GZP8 106 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 CSDC2Q9Y534 153 aaKnown RBP3.87□□□□□ -1.79
LIMA1-212ENST00000552491 LRRK2Q5S007 2527 aa3.87□□□□□ -1.79
LIMA1-212ENST00000552491 NAV2Q8IVL1 2488 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 F5H768 121 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 INSP01308 110 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 Q6YL49 198 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 C1orf158Q8N1D5 194 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 C3orf56Q8N813 242 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 PEMTQ9UBM1 199 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 SETXQ7Z333 2677 aaKnown RBP3.86□□□□□ -1.79
LIMA1-212ENST00000552491 TRACP01848 142 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 MEIG1Q5JSS6 88 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 PPDPFQ9H3Y8 114 aa3.86□□□□□ -1.79
LIMA1-212ENST00000552491 FSHBP01225 129 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 PRB1P04280 392 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 HERV-K104P63124 156 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 DAZ2Q13117 558 aaKnown RBP3.85□□□□□ -1.79
LIMA1-212ENST00000552491 DEFB114Q30KQ6 69 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 ODF3L2Q3SX64 289 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 DAZ4Q86SG3 579 aaKnown RBP3.85□□□□□ -1.79
LIMA1-212ENST00000552491 PRIMA1Q86XR5 153 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 ZNF843Q8N446 348 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 IL17DQ8TAD2 202 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 DAZ3Q9NR90 486 aaKnown RBP3.85□□□□□ -1.79
LIMA1-212ENST00000552491 FASNP49327 2511 aaKnown RBP3.85□□□□□ -1.79
LIMA1-212ENST00000552491 ZNF462Q96JM2 2506 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 TRGV1A0A0A0MS02 117 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 TRBV10-1A0A0K0K1A3 114 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 RPL36AP83881 106 aaKnown RBP3.85□□□□□ -1.79
LIMA1-212ENST00000552491 Q6ZTI0 123 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 RPL36ALQ969Q0 106 aaKnown RBP3.85□□□□□ -1.79
LIMA1-212ENST00000552491 CDC42SE2Q9NRR3 84 aa3.85□□□□□ -1.79
LIMA1-212ENST00000552491 PF4P02776 101 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 BAALC-AS2P0C853 105 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 KHDC1LQ5JSQ8 128 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 LCE5AQ5TCM9 118 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 SDIM1Q6ZPB5 146 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 LINC00643Q86TS7 51 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 DYNLRB2Q8TF09 96 aa3.84□□□□□ -1.79
LIMA1-212ENST00000552491 FAM236AA0A1B0GUQ0 79 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 FAM236BA0A1B0GV22 79 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 C9orf129Q5T035 196 aaKnown RBP3.84□□□□□ -1.8
LIMA1-212ENST00000552491 FAM222AQ5U5X8 452 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 HIST2H2BCQ6DN03 193 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 KRTAP5-3Q6L8H2 238 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 C4orf3Q8WVX3 66 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 Q9HAA7 133 aa3.84□□□□□ -1.8
LIMA1-212ENST00000552491 HELZ2Q9BYK8 2649 aaKnown RBP3.83□□□□□ -1.8
LIMA1-212ENST00000552491 IGKV2-28A0A075B6P5 120 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 TRAV13-2A0A0B4J235 113 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 LOC100131303A0A0U1RQF7 123 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 K7EQD1 137 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 IGKV2D-28P01615 120 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 IGHV4-31P0DP07 118 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 SMIM20Q8N5G0 67 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 LINC00337Q8N6G1 96 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 GCN1Q92616 2671 aaKnown RBP3.83□□□□□ -1.8
LIMA1-212ENST00000552491 INAFM2P0DMQ5 153 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 PLA2G2AP14555 144 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 RPL28P46779 137 aaKnown RBP3.83□□□□□ -1.8
LIMA1-212ENST00000552491 C11orf44Q8N8P7 122 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 FAM110AQ9BQ89 295 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 TMEM126AQ9H061 195 aa3.83□□□□□ -1.8
LIMA1-212ENST00000552491 FN1P02751 2386 aaKnown RBP3.83□□□□□ -1.8
LIMA1-212ENST00000552491 J3QKU1 62 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 STHQ8IWL8 128 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 CCDC168Q8NDH2 2452 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 ATP5G1P05496 136 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 GIG44P09565 113 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-212ENST00000552491 MALP21145 153 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 CXCL5P42830 114 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 KRTAP10-9P60411 292 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 MIR7-3HGQ8N6C7 128 aa3.82□□□□□ -1.8
LIMA1-212ENST00000552491 NOP10Q9NPE3 64 aaKnown RBP3.82□□□□□ -1.8
LIMA1-212ENST00000552491 A0A087WYN8 130 aa3.81□□□□□ -1.8
LIMA1-212ENST00000552491 TRAV25A0A0B4J276 109 aa3.81□□□□□ -1.8
LIMA1-212ENST00000552491 IGKV3OR2-268A0A0C4DH90 116 aa3.81□□□□□ -1.8
LIMA1-212ENST00000552491 PLAC8L1A1L4L8 177 aa3.81□□□□□ -1.8
LIMA1-212ENST00000552491 UBE2L6O14933 153 aa3.81□□□□□ -1.8
LIMA1-212ENST00000552491 CRPP02741 224 aa3.81□□□□□ -1.8
LIMA1-212ENST00000552491 C5orf38Q86SI9 138 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms