RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SMIM17P0DL12 118 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 UBE2G2P60604 165 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 ZNF726P1Q15940 193 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 AMMECR1LQ6DCA0 310 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 FAM19A5Q7Z5A7 132 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-204ENST00000549064 ISOC2Q96AB3 205 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 LINC00959A0A1B0GUT2 108 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 CENPXA8MT69 81 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 S100A5P33763 92 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 COTL1Q14019 142 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 C9orf129Q5T035 196 aaKnown RBP3.72□□□□□ -1.81
LIMA1-204ENST00000549064 LINC00173Q6ZV60 143 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 OR5A1Q8NGJ0 315 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 AP1S3Q96PC3 154 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 CAMK2N2Q96S95 79 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 TMEM167BQ9NRX6 74 aa3.72□□□□□ -1.81
LIMA1-204ENST00000549064 A0A1W2PRE2 83 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 PLA2G10O15496 165 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 OR5AL1P0C617 328 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 UBE2BP63146 152 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 MT1HP80294 61 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 ASB16-AS1Q495Z4 193 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 EIF5AL1Q6IS14 154 aaKnown RBP3.71□□□□□ -1.82
LIMA1-204ENST00000549064 RASL11AQ6T310 242 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 ZFP30Q9Y2G7 519 aa3.71□□□□□ -1.82
LIMA1-204ENST00000549064 CXorf1O96002 111 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 LTAP01374 205 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 UBE2G1P62253 170 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 TSKUQ8WUA8 353 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 MED28Q9H204 178 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 NIT2Q9NQR4 276 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 ANAPC11Q9NYG5 84 aa3.7□□□□□ -1.82
LIMA1-204ENST00000549064 KRTAP4-16G5E9R7 235 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-204ENST00000549064 M0QXV9 152 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 LYRM1O43325 122 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 ZNF861PO60384 105 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 CXCL1P09341 107 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 IL7P13232 177 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 NTF3P20783 257 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 DEFA1P59665 94 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 KRTAP10-6P60371 365 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-204ENST00000549064 KRTAP19-2Q3LHN2 52 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 KRTAP13-2Q52LG2 175 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 CBLN2Q8IUK8 224 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 HIST1H2BAQ96A08 127 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 FMC1Q96HJ9 113 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 TMEM101Q96IK0 257 aa3.69□□□□□ -1.82
LIMA1-204ENST00000549064 SS18Q15532 418 aa3.68□□□□□ -1.82
LIMA1-204ENST00000549064 LINC00304Q8N9R0 145 aa3.68□□□□□ -1.82
LIMA1-204ENST00000549064 PPP1R1CQ8WVI7 109 aa3.68□□□□□ -1.82
LIMA1-204ENST00000549064 C19orf71A6NCJ1 209 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 APCSP02743 223 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 ESDP10768 282 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 ATP6V0CP27449 155 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 AKR1C3P42330 323 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 H2BFSP57053 126 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 SPAG11BQ08648 103 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 RPS10P5Q9NQ39 176 aa3.67□□□□□ -1.82
LIMA1-204ENST00000549064 CCDC160A6NGH7 325 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 COX7A2LO14548 114 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 MPC2O95563 127 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 ZNF25P17030 456 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-204ENST00000549064 RAB4AP20338 218 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 KRTAP13-3Q3SY46 172 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 MRPL55Q7Z7F7 128 aaKnown RBP3.66□□□□□ -1.82
LIMA1-204ENST00000549064 C5orf38Q86SI9 138 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 LINC00337Q8N6G1 96 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 RPL39LQ96EH5 51 aaKnown RBP3.66□□□□□ -1.82
LIMA1-204ENST00000549064 BTF3L4Q96K17 158 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 KRTAP9-8Q9BYQ0 159 aa3.66□□□□□ -1.82
LIMA1-204ENST00000549064 INMT-MINDY4F8WBC2 141 aa3.65□□□□□ -1.83
LIMA1-204ENST00000549064 NCR2O95944 276 aa3.65□□□□□ -1.83
LIMA1-204ENST00000549064 IGLC6P0CF74 106 aa3.65□□□□□ -1.83
LIMA1-204ENST00000549064 GATD1Q8NB37 220 aa3.65□□□□□ -1.83
LIMA1-204ENST00000549064 OR2D3Q8NGH3 330 aa3.65□□□□□ -1.83
LIMA1-204ENST00000549064 PSMG3Q9BT73 122 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-204ENST00000549064 CTXND1A0A1B0GTU2 59 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 G3V3Q6 166 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 TLX1NBP0CAT3 122 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 DSCR10P59022 87 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 RNASE13Q5GAN3 156 aaKnown RBP3.64□□□□□ -1.83
LIMA1-204ENST00000549064 COA6Q5JTJ3 125 aaKnown RBP3.64□□□□□ -1.83
LIMA1-204ENST00000549064 UNQ6190/PRO20217Q6UXQ8 127 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 TEX43Q6ZNM6 134 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 STOML3Q8TAV4 291 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 IMMP2LQ96T52 175 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 NKX6-2Q9C056 277 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-204ENST00000549064 SMDT1Q9H4I9 107 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 CDC42SE2Q9NRR3 84 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 MRPL35Q9NZE8 188 aaKnown RBP3.64□□□□□ -1.83
LIMA1-204ENST00000549064 C6orf48Q9UBA6 75 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 TNFSF18Q9UNG2 199 aa3.64□□□□□ -1.83
LIMA1-204ENST00000549064 RAB19A4D1S5 217 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 SDHAF1A6NFY7 115 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 TRGC1P0CF51 173 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 PET100P0DJ07 73 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 SERF2P84101 59 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 BAGE2Q86Y30 109 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 MAP1LC3CQ9BXW4 147 aa3.63□□□□□ -1.83
LIMA1-204ENST00000549064 ALG5Q9Y673 324 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms