RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 Q8N9P0 234 aaPredicted RBP2.7□□□□□ -1.98
LIMS1-214ENST00000542845 Q8NBF4 154 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 OR2D3Q8NGH3 330 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 C11orf52Q96A22 123 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 FMC1Q96HJ9 113 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 WFDC1Q9HC57 220 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 HSPB11Q9Y547 144 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 ALG5Q9Y673 324 aa2.7□□□□□ -1.98
LIMS1-214ENST00000542845 A0A1W2PRE2 83 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 ESDP10768 282 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 PMCHP20382 165 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 RPL28P46779 137 aaKnown RBP2.69□□□□□ -1.98
LIMS1-214ENST00000542845 KRTAP13-3Q3SY46 172 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 RNASE13Q5GAN3 156 aaKnown RBP2.69□□□□□ -1.98
LIMS1-214ENST00000542845 UQCC3Q6UW78 93 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 UNQ6190/PRO20217Q6UXQ8 127 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 TMUB2Q71RG4 321 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 HIST1H2BAQ96A08 127 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 UBE2D4Q9Y2X8 147 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 USH2AO75445 5202 aa2.69□□□□□ -1.98
LIMS1-214ENST00000542845 FCGBPQ9Y6R7 5405 aaPredicted RBP2.69□□□□□ -1.98
LIMS1-214ENST00000542845 TRAV13-1A0A0B4J241 112 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 CCDC160A6NGH7 325 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 C1orf196B1AJZ1 125 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 H7C423 109 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 NDUFA1O15239 70 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 NUPR1O60356 82 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 LTAP01374 205 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 ZNF25P17030 456 aaPredicted RBP2.68□□□□□ -1.98
LIMS1-214ENST00000542845 KRTAP19-2Q3LHN2 52 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 STOML3Q8TAV4 291 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 ORAOV1Q8WV07 137 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 RPL39LQ96EH5 51 aaKnown RBP2.68□□□□□ -1.98
LIMS1-214ENST00000542845 LITAFQ99732 161 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 ACTR3CQ9C0K3 210 aaPredicted RBP2.68□□□□□ -1.98
LIMS1-214ENST00000542845 NUDT15Q9NV35 164 aa2.68□□□□□ -1.98
LIMS1-214ENST00000542845 SYNE2Q8WXH0 6885 aaKnown RBP2.68□□□□□ -1.98
LIMS1-214ENST00000542845 SSPOA2VEC9 5147 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 IGLV8-61A0A075B6I0 122 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 A0A1B0GVG6 124 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 E9PLD3 99 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 INMT-MINDY4F8WBC2 141 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 G3V3Q6 166 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 TRGC1P0CF51 173 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 ATP6V0CP27449 155 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 AKR1C3P42330 323 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 TMEM241Q24JQ0 296 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 GATD1Q8NB37 220 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 MARVELD1Q9BSK0 173 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 MED28Q9H204 178 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 CDC42SE2Q9NRR3 84 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 MRPL35Q9NZE8 188 aaKnown RBP2.67□□□□□ -1.98
LIMS1-214ENST00000542845 C6orf48Q9UBA6 75 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 C22orf24Q9Y442 160 aa2.67□□□□□ -1.98
LIMS1-214ENST00000542845 SDHAF1A6NFY7 115 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 RPL37AP8A6NKH3 93 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 KRTAP4-16G5E9R7 235 aaPredicted RBP2.66□□□□□ -1.98
LIMS1-214ENST00000542845 LYRM1O43325 122 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 BCE1O60756 84 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 NCR2O95944 276 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 MBP02144 154 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 CXCL1P09341 107 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 IL7P13232 177 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 UBE2AP49459 152 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 C9orf129Q5T035 196 aaKnown RBP2.66□□□□□ -1.98
LIMS1-214ENST00000542845 LYZL1Q6UWQ5 148 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 COX6B2Q6YFQ2 88 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 FP248Q71RG6 208 aaPredicted RBP2.66□□□□□ -1.98
LIMS1-214ENST00000542845 NOTCH2NLQ7Z3S9 236 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 BAGE2Q86Y30 109 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 C3orf22Q8N5N4 141 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 LINC00469Q8N7U9 141 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 DAND5Q8N907 189 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 PPP1R1CQ8WVI7 109 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 MRAP2Q96G30 205 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 NKX6-2Q9C056 277 aaPredicted RBP2.66□□□□□ -1.98
LIMS1-214ENST00000542845 SMDT1Q9H4I9 107 aa2.66□□□□□ -1.98
LIMS1-214ENST00000542845 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 I3L3M4 83 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 PLA2G10O15496 165 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 MPC2O95563 127 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 TLX1NBP0CAT3 122 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 CFC1P0CG37 223 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 FAM229BQ4G0N7 80 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 C6orf226Q5I0X4 101 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 OR10D4PQ8NGN7 298 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 TMEM242Q9NWH2 141 aa2.65□□□□□ -1.99
LIMS1-214ENST00000542845 MACF1Q9UPN3 7388 aaKnown RBP2.65□□□□□ -1.99
LIMS1-214ENST00000542845 PPP1R2P9O14990 202 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 IGLC6P0CF74 106 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 PET100P0DJ07 73 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 CTRLP40313 264 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 SERF2P84101 59 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 ZNF726P1Q15940 193 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 PCOTHQ58A44 107 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 C2orf82Q6UX34 121 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 PACRGQ96M98 296 aaPredicted RBP2.64□□□□□ -1.99
LIMS1-214ENST00000542845 XAGE1AQ9HD64 81 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 TNFSF18Q9UNG2 199 aa2.64□□□□□ -1.99
LIMS1-214ENST00000542845 CTXND1A0A1B0GTU2 59 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms