RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 DEFB114Q30KQ6 69 aa14.47□□□□□ -0.09
TMEM260-203ENST00000539559 C1orf158Q8N1D5 194 aa14.47□□□□□ -0.09
TMEM260-203ENST00000539559 Q9HAA7 133 aa14.47□□□□□ -0.09
TMEM260-203ENST00000539559 FAM240AA0A1B0GVK7 77 aa14.46□□□□□ -0.09
TMEM260-203ENST00000539559 SHISA2Q6UWI4 295 aa14.46□□□□□ -0.1
TMEM260-203ENST00000539559 NBPF19A0A087WUL8 3843 aa14.45□□□□□ -0.1
TMEM260-203ENST00000539559 ODF3L2Q3SX64 289 aa14.45□□□□□ -0.1
TMEM260-203ENST00000539559 PEMTQ9UBM1 199 aa14.45□□□□□ -0.1
TMEM260-203ENST00000539559 ITPR3Q14573 2671 aa14.45□□□□□ -0.1
TMEM260-203ENST00000539559 ZNF469Q96JG9 3925 aaPredicted RBP14.45□□□□□ -0.1
TMEM260-203ENST00000539559 FAM236AA0A1B0GUQ0 79 aa14.44□□□□□ -0.1
TMEM260-203ENST00000539559 FAM236BA0A1B0GV22 79 aa14.44□□□□□ -0.1
TMEM260-203ENST00000539559 BAALC-AS2P0C853 105 aa14.44□□□□□ -0.1
TMEM260-203ENST00000539559 SMIM20Q8N5G0 67 aa14.44□□□□□ -0.1
TMEM260-203ENST00000539559 HELZ2Q9BYK8 2649 aaKnown RBP14.44□□□□□ -0.1
TMEM260-203ENST00000539559 A0A1W2PRX2 142 aa14.44□□□□□ -0.1
TMEM260-203ENST00000539559 F5H768 121 aa14.44□□□□□ -0.1
TMEM260-203ENST00000539559 CCDC168Q8NDH2 2452 aa14.43□□□□□ -0.1
TMEM260-203ENST00000539559 LOC100131303A0A0U1RQF7 123 aa14.43□□□□□ -0.1
TMEM260-203ENST00000539559 C22orf24Q9Y442 160 aa14.43□□□□□ -0.1
TMEM260-203ENST00000539559 RPL36AP83881 106 aaKnown RBP14.42□□□□□ -0.1
TMEM260-203ENST00000539559 MRPL23Q16540 153 aaKnown RBP14.42□□□□□ -0.1
TMEM260-203ENST00000539559 RPL36ALQ969Q0 106 aaKnown RBP14.42□□□□□ -0.1
TMEM260-203ENST00000539559 CDC42SE2Q9NRR3 84 aa14.42□□□□□ -0.1
TMEM260-203ENST00000539559 STHQ8IWL8 128 aa14.42□□□□□ -0.1
TMEM260-203ENST00000539559 TOMM7Q9P0U1 55 aa14.42□□□□□ -0.1
TMEM260-203ENST00000539559 K7EQD1 137 aa14.41□□□□□ -0.1
TMEM260-203ENST00000539559 TMEM86BQ8N661 226 aa14.41□□□□□ -0.1
TMEM260-203ENST00000539559 SETXQ7Z333 2677 aaKnown RBP14.41□□□□□ -0.1
TMEM260-203ENST00000539559 TRBV7-7A0A0K0K1E9 115 aa14.4□□□□□ -0.1
TMEM260-203ENST00000539559 NOP10Q9NPE3 64 aaKnown RBP14.4□□□□□ -0.1
TMEM260-203ENST00000539559 C4orf3Q8WVX3 66 aa14.38□□□□□ -0.11
TMEM260-203ENST00000539559 MIR7-3HGQ8N6C7 128 aa14.38□□□□□ -0.11
TMEM260-203ENST00000539559 LINC00337Q8N6G1 96 aa14.37□□□□□ -0.11
TMEM260-203ENST00000539559 FLNAP21333 2647 aaKnown RBP14.37□□□□□ -0.11
TMEM260-203ENST00000539559 UBE2L6O14933 153 aa14.36□□□□□ -0.11
TMEM260-203ENST00000539559 C9orf129Q5T035 196 aaKnown RBP14.36□□□□□ -0.11
TMEM260-203ENST00000539559 GAGE2AQ6NT46 116 aa14.36□□□□□ -0.11
TMEM260-203ENST00000539559 WFDC10AQ9H1F0 79 aa14.36□□□□□ -0.11
TMEM260-203ENST00000539559 PDZD2O15018 2839 aa14.36□□□□□ -0.11
TMEM260-203ENST00000539559 IL17DQ8TAD2 202 aa14.35□□□□□ -0.11
TMEM260-203ENST00000539559 IGKV2-28A0A075B6P5 120 aa14.34□□□□□ -0.11
TMEM260-203ENST00000539559 IGKV2D-28P01615 120 aa14.34□□□□□ -0.11
TMEM260-203ENST00000539559 TRACP01848 142 aa14.34□□□□□ -0.11
TMEM260-203ENST00000539559 DNAJC9-AS1A6NH13 148 aa14.34□□□□□ -0.11
TMEM260-203ENST00000539559 FAM19A3Q7Z5A8 133 aa14.34□□□□□ -0.11
TMEM260-203ENST00000539559 CSDC2Q9Y534 153 aaKnown RBP14.34□□□□□ -0.11
TMEM260-203ENST00000539559 KRTAP1-1Q07627 177 aa14.33□□□□□ -0.12
TMEM260-203ENST00000539559 TMEM243Q9BU79 118 aa14.33□□□□□ -0.12
TMEM260-203ENST00000539559 A0A087WYN8 130 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 HERV-K104P63124 156 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 SND1-IT1Q9HBX3 110 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 CRPP02741 224 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 ATP5G1P05496 136 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 ACYP1P07311 99 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 LINC00158P58513 81 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 COPS9Q8WXC6 57 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 UNC79Q9P2D8 2635 aa14.32□□□□□ -0.12
TMEM260-203ENST00000539559 C11orf68Q9H3H3 251 aaKnown RBP14.31□□□□□ -0.12
TMEM260-203ENST00000539559 IGLV4-60A0A075B6I1 120 aa14.31□□□□□ -0.12
TMEM260-203ENST00000539559 TRBV10-1A0A0K0K1A3 114 aa14.31□□□□□ -0.12
TMEM260-203ENST00000539559 COX7B2Q8TF08 81 aa14.31□□□□□ -0.12
TMEM260-203ENST00000539559 ITPR2Q14571 2701 aa14.31□□□□□ -0.12
TMEM260-203ENST00000539559 TRGV2A0A075B6R0 118 aa14.3□□□□□ -0.12
TMEM260-203ENST00000539559 PFN2P35080 140 aa14.3□□□□□ -0.12
TMEM260-203ENST00000539559 LINC00643Q86TS7 51 aa14.3□□□□□ -0.12
TMEM260-203ENST00000539559 RPL35AP18077 110 aaKnown RBP14.29□□□□□ -0.12
TMEM260-203ENST00000539559 MALP21145 153 aa14.29□□□□□ -0.12
TMEM260-203ENST00000539559 SMIM11BQ8TCY0 68 aa14.29□□□□□ -0.12
TMEM260-203ENST00000539559 FN1P02751 2386 aaKnown RBP14.29□□□□□ -0.12
TMEM260-203ENST00000539559 ESM1Q9NQ30 184 aa14.28□□□□□ -0.12
TMEM260-203ENST00000539559 C5orf38Q86SI9 138 aa14.28□□□□□ -0.12
TMEM260-203ENST00000539559 C14orf132Q9NPU4 83 aa14.28□□□□□ -0.12
TMEM260-203ENST00000539559 RPL28P46779 137 aaKnown RBP14.27□□□□□ -0.12
TMEM260-203ENST00000539559 TRAV13-2A0A0B4J235 113 aa14.27□□□□□ -0.13
TMEM260-203ENST00000539559 GIG44P09565 113 aaPredicted RBP14.27□□□□□ -0.13
TMEM260-203ENST00000539559 CCL18P55774 89 aa14.26□□□□□ -0.13
TMEM260-203ENST00000539559 SLPIP03973 132 aa14.26□□□□□ -0.13
TMEM260-203ENST00000539559 PLAC8L1A1L4L8 177 aa14.25□□□□□ -0.13
TMEM260-203ENST00000539559 IMUPQ9GZP8 106 aa14.24□□□□□ -0.13
TMEM260-203ENST00000539559 ACANP16112 2415 aa14.24□□□□□ -0.13
TMEM260-203ENST00000539559 GCN1Q92616 2671 aaKnown RBP14.24□□□□□ -0.13
TMEM260-203ENST00000539559 SDIM1Q6ZPB5 146 aa14.24□□□□□ -0.13
TMEM260-203ENST00000539559 TRGV4A0A0C4DH28 118 aa14.23□□□□□ -0.13
TMEM260-203ENST00000539559 CCL24O00175 119 aa14.23□□□□□ -0.13
TMEM260-203ENST00000539559 DNAL4O96015 105 aa14.23□□□□□ -0.13
TMEM260-203ENST00000539559 C9orf153Q5TBE3 101 aa14.23□□□□□ -0.13
TMEM260-203ENST00000539559 KLK5Q9Y337 293 aaPredicted RBP14.23□□□□□ -0.13
TMEM260-203ENST00000539559 OR13C6PQ8NH95 151 aa14.23□□□□□ -0.13
TMEM260-203ENST00000539559 FAM110AQ9BQ89 295 aa14.23□□□□□ -0.13
TMEM260-203ENST00000539559 LECT2O14960 151 aa14.22□□□□□ -0.13
TMEM260-203ENST00000539559 FAM222AQ5U5X8 452 aa14.22□□□□□ -0.13
TMEM260-203ENST00000539559 PAX4O43316 350 aa14.21□□□□□ -0.13
TMEM260-203ENST00000539559 IGKV3D-7A0A0C4DH55 119 aa14.21□□□□□ -0.13
TMEM260-203ENST00000539559 INAFM2P0DMQ5 153 aa14.21□□□□□ -0.13
TMEM260-203ENST00000539559 NBEAL2Q6ZNJ1 2754 aa14.21□□□□□ -0.13
TMEM260-203ENST00000539559 RNASE1P07998 156 aaKnown RBP14.2□□□□□ -0.14
TMEM260-203ENST00000539559 NCR3O14931 201 aa14.2□□□□□ -0.14
TMEM260-203ENST00000539559 FASNP49327 2511 aaKnown RBP14.2□□□□□ -0.14
TMEM260-203ENST00000539559 IGHV3OR16-9A0A0B4J2B5 98 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 206.5 ms