RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ANKRD17O75179 2603 aaKnown RBP8.03□□□□□ -1.12
SYNE1-237ENST00000539504 J3QLI3 93 aa8.02□□□□□ -1.12
SYNE1-237ENST00000539504 C1orf158Q8N1D5 194 aa8.02□□□□□ -1.12
SYNE1-237ENST00000539504 C11orf68Q9H3H3 251 aaKnown RBP8.02□□□□□ -1.12
SYNE1-237ENST00000539504 COX7B2Q8TF08 81 aa8.02□□□□□ -1.13
SYNE1-237ENST00000539504 ATP5G1P05496 136 aa8.02□□□□□ -1.13
SYNE1-237ENST00000539504 FLNCQ14315 2725 aa8.02□□□□□ -1.13
SYNE1-237ENST00000539504 TRBV10-1A0A0K0K1A3 114 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 F5H768 121 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 PAX4O43316 350 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 ODF3L2Q3SX64 289 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 C14orf132Q9NPU4 83 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 C3orf22Q8N5N4 141 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 LINC00337Q8N6G1 96 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 LOC100131303A0A0U1RQF7 123 aa8.01□□□□□ -1.13
SYNE1-237ENST00000539504 IGKV3D-7A0A0C4DH55 119 aa8□□□□□ -1.13
SYNE1-237ENST00000539504 CSDC2Q9Y534 153 aaKnown RBP8□□□□□ -1.13
SYNE1-237ENST00000539504 SDIM1Q6ZPB5 146 aa8□□□□□ -1.13
SYNE1-237ENST00000539504 C4orf3Q8WVX3 66 aa8□□□□□ -1.13
SYNE1-237ENST00000539504 TRGV4A0A0C4DH28 118 aa8□□□□□ -1.13
SYNE1-237ENST00000539504 C5orf38Q86SI9 138 aa8□□□□□ -1.13
SYNE1-237ENST00000539504 A0A087WYN8 130 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 SMIM11BQ8TCY0 68 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 CUBNO60494 3623 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 EPG5Q9HCE0 2579 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 UQCRQO14949 82 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 PF4P02776 101 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 RPL28P46779 137 aaKnown RBP7.99□□□□□ -1.13
SYNE1-237ENST00000539504 LECT2O14960 151 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 FAM222AQ5U5X8 452 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 ABCA12Q86UK0 2595 aa7.99□□□□□ -1.13
SYNE1-237ENST00000539504 RPL35AP18077 110 aaKnown RBP7.98□□□□□ -1.13
SYNE1-237ENST00000539504 KLK5Q9Y337 293 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-237ENST00000539504 OVOL2Q9BRP0 275 aa7.98□□□□□ -1.13
SYNE1-237ENST00000539504 LRRK2Q5S007 2527 aa7.98□□□□□ -1.13
SYNE1-237ENST00000539504 SLPIP03973 132 aa7.98□□□□□ -1.13
SYNE1-237ENST00000539504 ITPR1Q14643 2758 aa7.98□□□□□ -1.13
SYNE1-237ENST00000539504 C22orf24Q9Y442 160 aa7.97□□□□□ -1.13
SYNE1-237ENST00000539504 CCDC168Q8NDH2 2452 aa7.97□□□□□ -1.13
SYNE1-237ENST00000539504 IGKV2-28A0A075B6P5 120 aa7.97□□□□□ -1.13
SYNE1-237ENST00000539504 IGKV2D-28P01615 120 aa7.97□□□□□ -1.13
SYNE1-237ENST00000539504 CCL18P55774 89 aa7.97□□□□□ -1.13
SYNE1-237ENST00000539504 CHD6Q8TD26 2715 aa7.96□□□□□ -1.13
SYNE1-237ENST00000539504 FAM19A3Q7Z5A8 133 aa7.96□□□□□ -1.13
SYNE1-237ENST00000539504 NCR3O14931 201 aa7.96□□□□□ -1.14
SYNE1-237ENST00000539504 C6orf226Q5I0X4 101 aa7.96□□□□□ -1.14
SYNE1-237ENST00000539504 PPDPFQ9H3Y8 114 aa7.96□□□□□ -1.14
SYNE1-237ENST00000539504 IGLV4-60A0A075B6I1 120 aa7.96□□□□□ -1.14
SYNE1-237ENST00000539504 IGHV4-31P0DP07 118 aa7.96□□□□□ -1.14
SYNE1-237ENST00000539504 C9orf129Q5T035 196 aaKnown RBP7.96□□□□□ -1.14
SYNE1-237ENST00000539504 CFAP46Q8IYW2 2715 aa7.96□□□□□ -1.14
SYNE1-237ENST00000539504 H0YGX0 51 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 CXCL5P42830 114 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 LINC00526Q96FQ7 95 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 UTP20O75691 2785 aaKnown RBP7.95□□□□□ -1.14
SYNE1-237ENST00000539504 FN1P02751 2386 aaKnown RBP7.95□□□□□ -1.14
SYNE1-237ENST00000539504 MXRA5Q9NR99 2828 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 PLA2G2AP14555 144 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 COX7CP15954 63 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 WFDC10AQ9H1F0 79 aa7.95□□□□□ -1.14
SYNE1-237ENST00000539504 ATOX1O00244 68 aa7.94□□□□□ -1.14
SYNE1-237ENST00000539504 ZFYVE26Q68DK2 2539 aa7.94□□□□□ -1.14
SYNE1-237ENST00000539504 A0A1B0GX51 115 aa7.94□□□□□ -1.14
SYNE1-237ENST00000539504 hADV29S1A0JD25 119 aa7.94□□□□□ -1.14
SYNE1-237ENST00000539504 RNASE1P07998 156 aaKnown RBP7.94□□□□□ -1.14
SYNE1-237ENST00000539504 LRRC75A-AS1Q8N1F1 130 aa7.94□□□□□ -1.14
SYNE1-237ENST00000539504 A0A087WVE0 104 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 LINC00846Q9NV44 126 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 A0A096LNT2 108 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 CCL24O00175 119 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 XCL1P47992 114 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 HIST1H4AP62805 103 aaKnown RBP7.93□□□□□ -1.14
SYNE1-237ENST00000539504 CSMD2Q7Z408 3487 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 LOC107984640A0A0U1RRK4 108 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 CLPSL2Q6UWE3 100 aa7.93□□□□□ -1.14
SYNE1-237ENST00000539504 IL17DQ8TAD2 202 aa7.92□□□□□ -1.14
SYNE1-237ENST00000539504 IBA57-AS1B1ANH7 110 aa7.92□□□□□ -1.14
SYNE1-237ENST00000539504 DEFB130BP0DP73 79 aa7.92□□□□□ -1.14
SYNE1-237ENST00000539504 DEFB130AP0DP74 79 aa7.92□□□□□ -1.14
SYNE1-237ENST00000539504 TRAV25A0A0B4J276 109 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 C16orf74Q96GX8 76 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 TEX15Q9BXT5 2789 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 TRBV6-8A0A0A6YYG3 113 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 FSHBP01225 129 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 ORMDL1Q9P0S3 153 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 IGHV3OR16-9A0A0B4J2B5 98 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 TMEM86BQ8N661 226 aa7.91□□□□□ -1.14
SYNE1-237ENST00000539504 TRBV6-4A0A1B0GX49 114 aa7.9□□□□□ -1.14
SYNE1-237ENST00000539504 RPL18AQ02543 176 aaKnown RBP7.9□□□□□ -1.14
SYNE1-237ENST00000539504 FBN2P35556 2912 aa7.89□□□□□ -1.15
SYNE1-237ENST00000539504 A0A096LPF7 62 aa7.89□□□□□ -1.15
SYNE1-237ENST00000539504 A0A087WZ39 114 aa7.89□□□□□ -1.15
SYNE1-237ENST00000539504 CFAP161Q6P656 301 aa7.89□□□□□ -1.15
SYNE1-237ENST00000539504 PIEZO1Q92508 2521 aa7.88□□□□□ -1.15
SYNE1-237ENST00000539504 PRR3P79522 188 aaKnown RBP7.88□□□□□ -1.15
SYNE1-237ENST00000539504 KRTAP10-9P60411 292 aa7.88□□□□□ -1.15
SYNE1-237ENST00000539504 Q6JHZ5 121 aa7.88□□□□□ -1.15
SYNE1-237ENST00000539504 ZNF462Q96JM2 2506 aa7.88□□□□□ -1.15
SYNE1-237ENST00000539504 LINC00959A0A1B0GUT2 108 aa7.88□□□□□ -1.15
SYNE1-237ENST00000539504 J3KT08 172 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms