RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ORAOV1Q8WV07 137 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 C20orf78Q9BR46 151 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 TRBV24-1A0A075B6N3 115 aa8.18□□□□□ -1.1
SS18-204ENST00000539244 FAM168BA1KXE4 195 aa8.18□□□□□ -1.1
SS18-204ENST00000539244 LINC00862A6NCI5 91 aa8.18□□□□□ -1.1
SS18-204ENST00000539244 MRPL51Q4U2R6 128 aaKnown RBP8.18□□□□□ -1.1
SS18-204ENST00000539244 FAM104BQ5XKR9 115 aa8.18□□□□□ -1.1
SS18-204ENST00000539244 ALKAL2Q6UX46 152 aa8.18□□□□□ -1.1
SS18-204ENST00000539244 ZNF727A8MUV8 499 aa8.17□□□□□ -1.1
SS18-204ENST00000539244 RPL39P62891 51 aaKnown RBP8.17□□□□□ -1.1
SS18-204ENST00000539244 MRPS36P82909 103 aaKnown RBP8.17□□□□□ -1.1
SS18-204ENST00000539244 C10orf25Q5T742 122 aa8.17□□□□□ -1.1
SS18-204ENST00000539244 KRTAP7-1Q8IUC3 87 aa8.17□□□□□ -1.1
SS18-204ENST00000539244 SMDT1Q9H4I9 107 aa8.17□□□□□ -1.1
SS18-204ENST00000539244 SPANXA1Q9NS26 97 aa8.17□□□□□ -1.1
SS18-204ENST00000539244 C6orf48Q9UBA6 75 aa8.17□□□□□ -1.1
SS18-204ENST00000539244 EIF5A2Q9GZV4 153 aaKnown RBP8.16□□□□□ -1.1
SS18-204ENST00000539244 NAT8BQ9UHF3 227 aa8.16□□□□□ -1.1
SS18-204ENST00000539244 MUC2Q02817 5179 aa8.15□□□□□ -1.1
SS18-204ENST00000539244 SRP19P09132 144 aaKnown RBP8.15□□□□□ -1.1
SS18-204ENST00000539244 UNQ6190/PRO20217Q6UXQ8 127 aa8.15□□□□□ -1.1
SS18-204ENST00000539244 FAM19A5Q7Z5A7 132 aaPredicted RBP8.15□□□□□ -1.1
SS18-204ENST00000539244 RPL13AP40429 203 aaKnown RBP8.14□□□□□ -1.11
SS18-204ENST00000539244 HBBP68871 147 aa8.14□□□□□ -1.11
SS18-204ENST00000539244 KIAA0087Q14695 138 aa8.14□□□□□ -1.11
SS18-204ENST00000539244 FAM74A3Q4VXF1 159 aa8.14□□□□□ -1.11
SS18-204ENST00000539244 SMIM2Q9BVW6 85 aa8.14□□□□□ -1.11
SS18-204ENST00000539244 A0A1B0GW15 77 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 IFITM10A6NMD0 228 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 M0QXV9 152 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 TNFRSF6BO95407 300 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 CKS2P33552 79 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 GAGE2EQ4V326 116 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 GAGE2DQ9UEU5 116 aa8.13□□□□□ -1.11
SS18-204ENST00000539244 TGIF2-C20orf24A0A0A6YYL0 155 aa8.12□□□□□ -1.11
SS18-204ENST00000539244 TRBV30A0A0K0K1B3 111 aa8.12□□□□□ -1.11
SS18-204ENST00000539244 SMIM27A0A1W2PRY6 76 aa8.12□□□□□ -1.11
SS18-204ENST00000539244 CARHSP1Q9Y2V2 147 aaKnown RBP8.12□□□□□ -1.11
SS18-204ENST00000539244 UBE2D1P51668 147 aa8.11□□□□□ -1.11
SS18-204ENST00000539244 RPL23P62829 140 aaKnown RBP8.11□□□□□ -1.11
SS18-204ENST00000539244 UBE2BP63146 152 aa8.11□□□□□ -1.11
SS18-204ENST00000539244 D6R8Y8 96 aa8.1□□□□□ -1.11
SS18-204ENST00000539244 NDUFC2-KCTD14E9PQ53 114 aa8.1□□□□□ -1.11
SS18-204ENST00000539244 PRR4Q16378 134 aa8.1□□□□□ -1.11
SS18-204ENST00000539244 C9orf129Q5T035 196 aaKnown RBP8.1□□□□□ -1.11
SS18-204ENST00000539244 PYGO1Q9Y3Y4 419 aa8.1□□□□□ -1.11
SS18-204ENST00000539244 NPYP01303 97 aa8.09□□□□□ -1.11
SS18-204ENST00000539244 LINC00242Q5T6M2 205 aa8.09□□□□□ -1.11
SS18-204ENST00000539244 LINC01561Q8N1V8 128 aa8.09□□□□□ -1.11
SS18-204ENST00000539244 ZNF861PO60384 105 aa8.08□□□□□ -1.12
SS18-204ENST00000539244 PPBPP02775 128 aa8.08□□□□□ -1.12
SS18-204ENST00000539244 S100A8P05109 93 aa8.08□□□□□ -1.12
SS18-204ENST00000539244 IFI27P40305 119 aaPredicted RBP8.08□□□□□ -1.12
SS18-204ENST00000539244 NAT8Q9UHE5 227 aa8.08□□□□□ -1.12
SS18-204ENST00000539244 IGLV4-3A0A075B6K6 122 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 A0A0U1RQV1 116 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 A0A1B0GXF2 115 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 F8W036 122 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 ADIRFQ15847 76 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 C2orf82Q6UX34 121 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 AKAP14Q86UN6 197 aa8.07□□□□□ -1.12
SS18-204ENST00000539244 PACRGQ96M98 296 aaPredicted RBP8.07□□□□□ -1.12
SS18-204ENST00000539244 NUPR1O60356 82 aa8.06□□□□□ -1.12
SS18-204ENST00000539244 MRPL54Q6P161 138 aaKnown RBP8.05□□□□□ -1.12
SS18-204ENST00000539244 TMEM141Q96I45 108 aa8.05□□□□□ -1.12
SS18-204ENST00000539244 PRSS47A8MTI9 375 aa8.04□□□□□ -1.12
SS18-204ENST00000539244 C9JQL5 133 aa8.04□□□□□ -1.12
SS18-204ENST00000539244 RAB5AP20339 215 aa8.04□□□□□ -1.12
SS18-204ENST00000539244 TEX43Q6ZNM6 134 aa8.04□□□□□ -1.12
SS18-204ENST00000539244 ORMDL3Q8N138 153 aa8.04□□□□□ -1.12
SS18-204ENST00000539244 KRTAP9-2Q9BYQ4 174 aa8.03□□□□□ -1.12
SS18-204ENST00000539244 C22orf24Q9Y442 160 aa8.03□□□□□ -1.12
SS18-204ENST00000539244 TMEM136Q6ZRR5 245 aa8.02□□□□□ -1.13
SS18-204ENST00000539244 LINC00173Q6ZV60 143 aa8.02□□□□□ -1.13
SS18-204ENST00000539244 PRELID3AQ96N28 172 aa8.02□□□□□ -1.13
SS18-204ENST00000539244 AMELXQ99217 191 aa8.02□□□□□ -1.13
SS18-204ENST00000539244 C2orf88Q9BSF0 95 aa8.02□□□□□ -1.13
SS18-204ENST00000539244 TP73-AS1Q9UF72 201 aa8.02□□□□□ -1.13
SS18-204ENST00000539244 LBHQ53QV2 105 aaPredicted RBP8.01□□□□□ -1.13
SS18-204ENST00000539244 Q6ZN92 141 aa8.01□□□□□ -1.13
SS18-204ENST00000539244 ATP5L2Q7Z4Y8 100 aa8.01□□□□□ -1.13
SS18-204ENST00000539244 FAM19A3Q7Z5A8 133 aa8.01□□□□□ -1.13
SS18-204ENST00000539244 Q8IZM0 81 aa8.01□□□□□ -1.13
SS18-204ENST00000539244 LAMTOR2Q9Y2Q5 125 aa8.01□□□□□ -1.13
SS18-204ENST00000539244 A0A087X002 238 aa8□□□□□ -1.13
SS18-204ENST00000539244 PRSS2P07478 247 aa8□□□□□ -1.13
SS18-204ENST00000539244 NPSP0C0P6 89 aa8□□□□□ -1.13
SS18-204ENST00000539244 CKS1BP61024 79 aa8□□□□□ -1.13
SS18-204ENST00000539244 LCE2AQ5TA79 106 aaPredicted RBP8□□□□□ -1.13
SS18-204ENST00000539244 CTDSP1Q9GZU7 261 aa8□□□□□ -1.13
SS18-204ENST00000539244 TSPAN13O95857 204 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 SRSF3P84103 164 aaKnown RBP7.99□□□□□ -1.13
SS18-204ENST00000539244 C6orf226Q5I0X4 101 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 ZC2HC1BQ5TFG8 222 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 C2orf66Q6UXQ4 117 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 LINC00469Q8N7U9 141 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 XAGE1AQ9HD64 81 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 CYSLTR1Q9Y271 337 aa7.99□□□□□ -1.13
SS18-204ENST00000539244 BCE1O60756 84 aa7.98□□□□□ -1.13
SS18-204ENST00000539244 RPL28P46779 137 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms