RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 HIST3H2BBQ8N257 126 aa6.93□□□□□ -1.3
CLSTN3-206ENST00000535668 TRAV26-2A0A0B4J265 109 aa6.92□□□□□ -1.3
CLSTN3-206ENST00000535668 IGKV2-24A0A0C4DH68 120 aa6.92□□□□□ -1.3
CLSTN3-206ENST00000535668 TSHBP01222 138 aa6.92□□□□□ -1.3
CLSTN3-206ENST00000535668 SMIM15Q7Z3B0 74 aa6.92□□□□□ -1.3
CLSTN3-206ENST00000535668 RPL39LQ96EH5 51 aaKnown RBP6.92□□□□□ -1.3
CLSTN3-206ENST00000535668 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 IGKV2-29A2NJV5 120 aaPredicted RBP6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 RAB4AP20338 218 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 PTTG1IPP53801 180 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 SYCNQ0VAF6 134 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 RNF151Q2KHN1 245 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 C2orf48Q96LS8 159 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 CARD19Q96LW7 228 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 TMEM191AQ9H0A3 160 aa6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 RNASE7Q9H1E1 156 aaKnown RBP6.91□□□□□ -1.3
CLSTN3-206ENST00000535668 F8WDY8 70 aa6.9□□□□□ -1.3
CLSTN3-206ENST00000535668 RNASEKQ6P5S7 137 aaKnown RBP6.9□□□□□ -1.3
CLSTN3-206ENST00000535668 ZNF664Q8N3J9 261 aa6.9□□□□□ -1.3
CLSTN3-206ENST00000535668 MRAP2Q96G30 205 aa6.9□□□□□ -1.3
CLSTN3-206ENST00000535668 TMEM101Q96IK0 257 aa6.9□□□□□ -1.3
CLSTN3-206ENST00000535668 XCL1P47992 114 aa6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 ODF1Q14990 250 aa6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 JOSD1Q15040 202 aaPredicted RBP6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 SS18Q15532 418 aa6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 NUP35Q8NFH5 326 aa6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 TIMM21Q9BVV7 248 aa6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 MRPL18Q9H0U6 180 aaKnown RBP6.89□□□□□ -1.31
CLSTN3-206ENST00000535668 LOC107984640A0A0U1RRK4 108 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 ZNF561-AS1K7EIQ3 104 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 PPP1R17O96001 155 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 PMCHP20382 165 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 CAMPP49913 170 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 BORCS7Q96B45 105 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 HIST1H2BLQ99880 126 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 ST20Q9HBF5 79 aa6.88□□□□□ -1.31
CLSTN3-206ENST00000535668 IGLV4-69A0A075B6H9 119 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 IGKV3OR2-268A0A0C4DH90 116 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 A0A1B0GUT8 65 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 APOMO95445 188 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 RPL32P62910 135 aaKnown RBP6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 SMAGPQ0VAQ4 97 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 RIGQ13278 110 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 TMEM136Q6ZRR5 245 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 OR10D4PQ8NGN7 298 aa6.87□□□□□ -1.31
CLSTN3-206ENST00000535668 A0A1W2PNN7 141 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 HIGD1CA8MV81 97 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 VCYO14598 125 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 GAS8-AS1O95177 125 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 FABP4P15090 132 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 HBBP68871 147 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 PSORS1C2Q9UIG4 136 aa6.86□□□□□ -1.31
CLSTN3-206ENST00000535668 A0A1B0GXF2 115 aa6.85□□□□□ -1.31
CLSTN3-206ENST00000535668 IFITM10A6NMD0 228 aa6.85□□□□□ -1.31
CLSTN3-206ENST00000535668 COX7A2LO14548 114 aa6.85□□□□□ -1.31
CLSTN3-206ENST00000535668 TLX1NBP0CAT3 122 aa6.85□□□□□ -1.31
CLSTN3-206ENST00000535668 BAGE3Q86Y29 109 aa6.85□□□□□ -1.31
CLSTN3-206ENST00000535668 UBE2D4Q9Y2X8 147 aa6.85□□□□□ -1.31
CLSTN3-206ENST00000535668 TSTD3H0UI37 97 aa6.84□□□□□ -1.31
CLSTN3-206ENST00000535668 PYY3Q5JQD4 70 aa6.84□□□□□ -1.31
CLSTN3-206ENST00000535668 NRACQ8N912 160 aa6.84□□□□□ -1.31
CLSTN3-206ENST00000535668 LINC00526Q96FQ7 95 aa6.84□□□□□ -1.31
CLSTN3-206ENST00000535668 MRPL35Q9NZE8 188 aaKnown RBP6.84□□□□□ -1.31
CLSTN3-206ENST00000535668 LPAP08519 4548 aa6.84□□□□□ -1.32
CLSTN3-206ENST00000535668 MUC2Q02817 5179 aa6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 IGHV3OR16-9A0A0B4J2B5 98 aa6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 TCAPO15273 167 aa6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 SUMO2P61956 95 aaKnown RBP6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 C9orf116Q5BN46 136 aaPredicted RBP6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 FAM104AQ969W3 186 aa6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 CHCHD1Q96BP2 118 aaKnown RBP6.83□□□□□ -1.32
CLSTN3-206ENST00000535668 LBHQ53QV2 105 aaPredicted RBP6.82□□□□□ -1.32
CLSTN3-206ENST00000535668 C20orf78Q9BR46 151 aa6.82□□□□□ -1.32
CLSTN3-206ENST00000535668 PPBPP02775 128 aa6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 MALP21145 153 aa6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 MRPS36P82909 103 aaKnown RBP6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 MRPL54Q6P161 138 aaKnown RBP6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 DIRC1Q969H9 104 aa6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 CAMK2N2Q96S95 79 aa6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 KIR2DL4Q99706 377 aa6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 LAMTOR2Q9Y2Q5 125 aa6.81□□□□□ -1.32
CLSTN3-206ENST00000535668 IGLV1-50A0A075B6I6 118 aa6.8□□□□□ -1.32
CLSTN3-206ENST00000535668 IGLV7-43P04211 117 aa6.8□□□□□ -1.32
CLSTN3-206ENST00000535668 GAGE2BQ13066 116 aa6.8□□□□□ -1.32
CLSTN3-206ENST00000535668 AMN1Q8IY45 258 aa6.8□□□□□ -1.32
CLSTN3-206ENST00000535668 ALKBH7Q9BT30 221 aaPredicted RBP6.8□□□□□ -1.32
CLSTN3-206ENST00000535668 C20orf202A1L168 122 aa6.79□□□□□ -1.32
CLSTN3-206ENST00000535668 SERF1AO75920 110 aa6.79□□□□□ -1.32
CLSTN3-206ENST00000535668 KRTAP1-4P0C5Y4 121 aa6.79□□□□□ -1.32
CLSTN3-206ENST00000535668 PMCHL1Q16048 86 aa6.79□□□□□ -1.32
CLSTN3-206ENST00000535668 FAM104BQ5XKR9 115 aa6.79□□□□□ -1.32
CLSTN3-206ENST00000535668 SPANXA1Q9NS26 97 aa6.79□□□□□ -1.32
CLSTN3-206ENST00000535668 H0Y9J4 135 aa6.78□□□□□ -1.32
CLSTN3-206ENST00000535668 HSBP1O75506 76 aa6.78□□□□□ -1.32
CLSTN3-206ENST00000535668 FCER1GP30273 86 aa6.78□□□□□ -1.32
CLSTN3-206ENST00000535668 PDZD11Q5EBL8 140 aa6.78□□□□□ -1.32
CLSTN3-206ENST00000535668 C18orf32Q8TCD1 76 aa6.78□□□□□ -1.32
CLSTN3-206ENST00000535668 SPAG11BQ08648 103 aa6.77□□□□□ -1.33
CLSTN3-206ENST00000535668 LINC01561Q8N1V8 128 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms