RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 FAM223BA6NKX1 122 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 IGLV3-25P01717 112 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 IGLV3-27P01718 113 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV3-33P01772 117 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV1-8P0DP01 117 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF80P51504 273 aaPredicted RBP2.3□□□□□ -2.04
CSMD3-210ENST00000534172 FGF12P61328 243 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 TFF3Q07654 80 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 Q1T7F1 81 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 ESRGQ1W209 222 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 C2orf83Q53S99 150 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 S100A7L2Q5SY68 101 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 SFTA2Q6UW10 78 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 C20orf197Q8N268 126 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 DYNLRB2Q8TF09 96 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 TTTY13Q9BZ97 58 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 HERC2O95714 4834 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 UTP20O75691 2785 aaKnown RBP2.3□□□□□ -2.04
CSMD3-210ENST00000534172 NBASA2RRP1 2371 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 POLEQ07864 2286 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 TRAV12-1A0A0B4J245 112 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 H3BSH0 61 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 COX7A2LO14548 114 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 CIRBPQ14011 172 aaKnown RBP2.3□□□□□ -2.04
CSMD3-210ENST00000534172 TIMM21Q9BVV7 248 aa2.3□□□□□ -2.04
CSMD3-210ENST00000534172 THADAQ6YHU6 1953 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 BOD1L1Q8NFC6 3051 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 IGKV1D-43A0A0B4J1Z2 117 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 IGKV1-12A0A0C4DH73 117 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV7-4-1A0A0J9YVY3 117 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 A0A1B0GUT8 65 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 TMEM30CPA0ZSE6 113 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 KRTAP9-6A8MVA2 160 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 IGKV1D-12P01611 117 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 FUSP35637 526 aaKnown RBP eCLIP2.29□□□□□ -2.04
CSMD3-210ENST00000534172 LUZP6Q538Z0 58 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 VMO1Q7Z5L0 202 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 DYNAPQ8N1N2 210 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 WFDC5Q8TCV5 224 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 TMEM263Q8WUH6 116 aaKnown RBP2.29□□□□□ -2.04
CSMD3-210ENST00000534172 UBE2D4Q9Y2X8 147 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 MDC1Q14676 2089 aaKnown RBP2.29□□□□□ -2.04
CSMD3-210ENST00000534172 TRBV10-3A0A0K0K1G6 114 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 PINLYPA6NC86 204 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF815PA8K554 130 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 E7EQL1 145 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 PANO1I0J062 215 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV3-30P01768 117 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV3-30-5P0DP03 117 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 CD28P10747 220 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 EDDM3BP56851 147 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 MRPL51Q4U2R6 128 aaKnown RBP2.29□□□□□ -2.04
CSMD3-210ENST00000534172 ATP11AUNQ6ZP68 121 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 DIRC1Q969H9 104 aa2.29□□□□□ -2.04
CSMD3-210ENST00000534172 SPTBN1Q01082 2364 aaKnown RBP2.28□□□□□ -2.04
CSMD3-210ENST00000534172 NIPBLQ6KC79 2804 aaeCLIP2.28□□□□□ -2.04
CSMD3-210ENST00000534172 PKD1L1Q8TDX9 2849 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 IGLV3-32A0A0A0MS00 114 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 TRBV6-6A0A0A6YYG2 114 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 F8VRH5 84 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF137PP52743 207 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 BSPH1Q075Z2 132 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.28□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF826PQ6ZT77 177 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 UBALD1Q8TB05 177 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 HYDINQ4G0P3 5121 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 IGKV1D-17A0A075B6S4 117 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV3-49A0A0A0MS15 119 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 TRAV40A0A0B4J280 105 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 TMEM223A0PJW6 202 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 F8WEM9 126 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 M0R135 149 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 PIRTP0C851 137 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 FLNAP21333 2647 aaKnown RBP2.28□□□□□ -2.04
CSMD3-210ENST00000534172 BLCAPP62952 87 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 NTM-AS1Q6ZSK4 140 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 ADGRG4Q8IZF6 3080 aa2.28□□□□□ -2.04
CSMD3-210ENST00000534172 SPENQ96T58 3664 aaKnown RBP2.28□□□□□ -2.04
CSMD3-210ENST00000534172 HEATR1Q9H583 2144 aaKnown RBP2.27□□□□□ -2.05
CSMD3-210ENST00000534172 KMT2CQ8NEZ4 4911 aaKnown RBP2.27□□□□□ -2.05
CSMD3-210ENST00000534172 NOTCH1P46531 2555 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 CEP192Q8TEP8 1941 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 A0A0J9YY99 117 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 BPY2O14599 106 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 IGKV1-5P01602 117 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 COX6B1P14854 86 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 S100A4P26447 101 aaKnown RBP2.27□□□□□ -2.05
CSMD3-210ENST00000534172 ANK2Q01484 3957 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 CSPG4Q6UVK1 2322 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 EML6Q6ZMW3 1958 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 IGKV1-9A0A0C4DH69 117 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 D6R8Y8 96 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 E7EUB6 86 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 DNAL4O96015 105 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 HMGA1P17096 107 aaKnown RBP2.27□□□□□ -2.05
CSMD3-210ENST00000534172 SYCNQ0VAF6 134 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 EIF4EBP1Q13541 118 aaPredicted RBP2.27□□□□□ -2.05
CSMD3-210ENST00000534172 GPHB5Q86YW7 130 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 CIRBP-AS1Q8TBR5 109 aa2.27□□□□□ -2.05
CSMD3-210ENST00000534172 ITLN2Q8WWU7 325 aaPredicted RBP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms