RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 APOMO95445 188 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 APOC3P02656 99 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 XCL1P47992 114 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 MEF2BQ02080 365 aaPredicted RBP3.71□□□□□ -1.82
CD44-237ENST00000534082 COL5A1-AS1Q5SY13 56 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 SUMO4Q6EEV6 95 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 EIF5AL1Q6IS14 154 aaKnown RBP3.71□□□□□ -1.82
CD44-237ENST00000534082 WDR61Q9GZS3 305 aaKnown RBP3.71□□□□□ -1.82
CD44-237ENST00000534082 PRO1933Q9H354 126 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 SPANXA1Q9NS26 97 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 ARL2-SNX15V9GYD0 113 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 NEBP20929 6669 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 TRIAP1O43715 76 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 SH2D1AO60880 128 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 SEC61BP60468 96 aaKnown RBP3.7□□□□□ -1.82
CD44-237ENST00000534082 KRTAP19-2Q3LHN2 52 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 AKR1C8PQ5T2L2 129 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 UQCC3Q6UW78 93 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 PQLC2Q6ZP29 291 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 OR10AG1Q8NH19 301 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 HIST1H2BAQ96A08 127 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 ISOC2Q96AB3 205 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 MED28Q9H204 178 aa3.7□□□□□ -1.82
CD44-237ENST00000534082 FLGP20930 4061 aaPredicted RBP3.69□□□□□ -1.82
CD44-237ENST00000534082 IGLV4-69A0A075B6H9 119 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 FAM168BA1KXE4 195 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 TMEM218A2RU14 115 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 HMGB3O15347 200 aaKnown RBP3.69□□□□□ -1.82
CD44-237ENST00000534082 NDUFB6O95139 128 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 IFNA1P01562 189 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 CRIP1P50238 77 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 UBE2BP63146 152 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 FAM19A5Q7Z5A7 132 aaPredicted RBP3.69□□□□□ -1.82
CD44-237ENST00000534082 Q86TA4 180 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 SVBPQ8N300 66 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 LINC00337Q8N6G1 96 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 LINC00304Q8N9R0 145 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 NUP35Q8NFH5 326 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 EPDR1Q9UM22 224 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 V9GYY9 64 aa3.69□□□□□ -1.82
CD44-237ENST00000534082 COLCA2A8K830 154 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 ZNF861PO60384 105 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 TSHBP01222 138 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 ARL14EPLP0DKL9 152 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 RPL12P30050 165 aaKnown RBP3.68□□□□□ -1.82
CD44-237ENST00000534082 TMEM241Q24JQ0 296 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 OR5A1Q8NGJ0 315 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 PGLYRP4Q96LB8 373 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 CAMK2N2Q96S95 79 aa3.68□□□□□ -1.82
CD44-237ENST00000534082 ZNF471Q9BX82 626 aaPredicted RBP3.68□□□□□ -1.82
CD44-237ENST00000534082 ACTR3CQ9C0K3 210 aaPredicted RBP3.68□□□□□ -1.82
CD44-237ENST00000534082 MUC21A0A140T8X8 626 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 M0QY20 66 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 GIPP09681 153 aaPredicted RBP3.67□□□□□ -1.82
CD44-237ENST00000534082 SMIM17P0DL12 118 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 PEA15Q15121 130 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 KRTAP13-3Q3SY46 172 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 KRTAP13-2Q52LG2 175 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 PYDC2Q56P42 97 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 C10orf91Q5T1B1 145 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 AMMECR1LQ6DCA0 310 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 AP1S3Q96PC3 154 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 SIGMAR1Q99720 223 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 OPRPNQ99935 248 aaPredicted RBP3.67□□□□□ -1.82
CD44-237ENST00000534082 MARVELD1Q9BSK0 173 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 CTDSP1Q9GZU7 261 aa3.67□□□□□ -1.82
CD44-237ENST00000534082 C19orf71A6NCJ1 209 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 K7EN84 100 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 M0R2T5 61 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 BCL2L11O43521 198 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 MT-ND4LP03901 98 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 MGPP08493 103 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 JOSD1Q15040 202 aaPredicted RBP3.66□□□□□ -1.82
CD44-237ENST00000534082 SPANXN1Q5VSR9 72 aa3.66□□□□□ -1.82
CD44-237ENST00000534082 LINC00959A0A1B0GUT2 108 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 IFITM10A6NMD0 228 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 MPC2O95563 127 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 GCHFRP30047 84 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 IL15RAQ13261 267 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 FP248Q71RG6 208 aaPredicted RBP3.65□□□□□ -1.83
CD44-237ENST00000534082 COX8CQ7Z4L0 72 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 KRTAP7-1Q8IUC3 87 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 CBLN2Q8IUK8 224 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 OR10D4PQ8NGN7 298 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 SMCO4Q9NRQ5 59 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 HSPB8Q9UJY1 196 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 TNFSF18Q9UNG2 199 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 V9GYH0 126 aa3.65□□□□□ -1.83
CD44-237ENST00000534082 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.64□□□□□ -1.83
CD44-237ENST00000534082 IGKV2-29A2NJV5 120 aaPredicted RBP3.64□□□□□ -1.83
CD44-237ENST00000534082 PEX7O00628 323 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 HSBP1O75506 76 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 RHEBQ15382 184 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 RASL11AQ6T310 242 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 CD164L2Q6UWJ8 174 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 FA2HQ7L5A8 372 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 C2orf48Q96LS8 159 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 ANAPC11Q9NYG5 84 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 ERG28Q9UKR5 140 aa3.64□□□□□ -1.83
CD44-237ENST00000534082 NAP1L6A6NFF2 107 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms