RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 TSHBP01222 138 aa10.81□□□□□ -0.68
PCDHA9-202ENST00000532602 CHCHD7Q9BUK0 85 aa10.81□□□□□ -0.68
PCDHA9-202ENST00000532602 TP73-AS1Q9UF72 201 aa10.8□□□□□ -0.68
PCDHA9-202ENST00000532602 A8MZ25 164 aa10.8□□□□□ -0.68
PCDHA9-202ENST00000532602 EXPH5Q8NEV8 1989 aa10.79□□□□□ -0.68
PCDHA9-202ENST00000532602 ZFYVE26Q68DK2 2539 aa10.79□□□□□ -0.68
PCDHA9-202ENST00000532602 IGKV2-28A0A075B6P5 120 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 IGKV2D-28P01615 120 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 UBE2D4Q9Y2X8 147 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 IGLV1-51P01701 117 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 PTH2Q96A98 100 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 CHD8Q9HCK8 2581 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 BRI3O95415 125 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 ODF3L2Q3SX64 289 aa10.78□□□□□ -0.68
PCDHA9-202ENST00000532602 CCKP06307 115 aa10.77□□□□□ -0.68
PCDHA9-202ENST00000532602 UBE2D3P61077 147 aa10.77□□□□□ -0.68
PCDHA9-202ENST00000532602 UBE2D2P62837 147 aa10.77□□□□□ -0.68
PCDHA9-202ENST00000532602 COX17Q14061 63 aa10.77□□□□□ -0.69
PCDHA9-202ENST00000532602 CENPFP49454 3210 aa10.77□□□□□ -0.69
PCDHA9-202ENST00000532602 WDR87Q6ZQQ6 2873 aa10.77□□□□□ -0.69
PCDHA9-202ENST00000532602 CRIP2P52943 208 aaPredicted RBP10.77□□□□□ -0.69
PCDHA9-202ENST00000532602 POLR2KP53803 58 aaKnown RBP10.77□□□□□ -0.69
PCDHA9-202ENST00000532602 GAS8-AS1O95177 125 aa10.76□□□□□ -0.69
PCDHA9-202ENST00000532602 C1orf158Q8N1D5 194 aa10.76□□□□□ -0.69
PCDHA9-202ENST00000532602 TRBV30A0A0K0K1B3 111 aa10.76□□□□□ -0.69
PCDHA9-202ENST00000532602 C16orf95Q9H693 158 aa10.75□□□□□ -0.69
PCDHA9-202ENST00000532602 ZNF580Q9UK33 172 aa10.75□□□□□ -0.69
PCDHA9-202ENST00000532602 NRACQ8N912 160 aa10.75□□□□□ -0.69
PCDHA9-202ENST00000532602 Q8IZM0 81 aa10.75□□□□□ -0.69
PCDHA9-202ENST00000532602 NDUFC2O95298 119 aa10.74□□□□□ -0.69
PCDHA9-202ENST00000532602 SLPIP03973 132 aa10.74□□□□□ -0.69
PCDHA9-202ENST00000532602 PPDPFQ9H3Y8 114 aa10.74□□□□□ -0.69
PCDHA9-202ENST00000532602 Q6ZQY7 126 aa10.73□□□□□ -0.69
PCDHA9-202ENST00000532602 ABCA12Q86UK0 2595 aa10.73□□□□□ -0.69
PCDHA9-202ENST00000532602 J3KT08 172 aa10.73□□□□□ -0.69
PCDHA9-202ENST00000532602 TRIAP1O43715 76 aa10.72□□□□□ -0.69
PCDHA9-202ENST00000532602 SPINK6Q6UWN8 80 aa10.72□□□□□ -0.69
PCDHA9-202ENST00000532602 PLAC8L1A1L4L8 177 aa10.72□□□□□ -0.69
PCDHA9-202ENST00000532602 CDC42SE2Q9NRR3 84 aa10.71□□□□□ -0.69
PCDHA9-202ENST00000532602 MAPKAPK5-AS1Q8N8E1 139 aa10.71□□□□□ -0.7
PCDHA9-202ENST00000532602 ZNF73O43830 326 aaPredicted RBP10.7□□□□□ -0.7
PCDHA9-202ENST00000532602 CNFNQ9BYD5 112 aa10.7□□□□□ -0.7
PCDHA9-202ENST00000532602 EGFEM1PQ0D2K5 195 aa10.7□□□□□ -0.7
PCDHA9-202ENST00000532602 DNAH12Q6ZR08 3092 aa10.7□□□□□ -0.7
PCDHA9-202ENST00000532602 TEX49A0A1B0GTD5 131 aa10.7□□□□□ -0.7
PCDHA9-202ENST00000532602 RPL28P46779 137 aaKnown RBP10.7□□□□□ -0.7
PCDHA9-202ENST00000532602 CYSRT1A8MQ03 144 aa10.69□□□□□ -0.7
PCDHA9-202ENST00000532602 WFDC10BQ8IUB3 73 aa10.69□□□□□ -0.7
PCDHA9-202ENST00000532602 K7ERS5 55 aa10.69□□□□□ -0.7
PCDHA9-202ENST00000532602 G3V4G9 280 aa10.69□□□□□ -0.7
PCDHA9-202ENST00000532602 SCXQ7RTU7 201 aa10.69□□□□□ -0.7
PCDHA9-202ENST00000532602 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.68□□□□□ -0.7
PCDHA9-202ENST00000532602 COL4A2P08572 1712 aa10.68□□□□□ -0.7
PCDHA9-202ENST00000532602 LRRK2Q5S007 2527 aa10.68□□□□□ -0.7
PCDHA9-202ENST00000532602 RPL37AP8A6NKH3 93 aa10.68□□□□□ -0.7
PCDHA9-202ENST00000532602 USP9XQ93008 2570 aaPredicted RBP10.67□□□□□ -0.7
PCDHA9-202ENST00000532602 C3orf84H3BNL1 204 aa10.67□□□□□ -0.7
PCDHA9-202ENST00000532602 ENHOQ6UWT2 76 aa10.67□□□□□ -0.7
PCDHA9-202ENST00000532602 SDIM1Q6ZPB5 146 aa10.67□□□□□ -0.7
PCDHA9-202ENST00000532602 HRCT1Q6UXD1 115 aa10.66□□□□□ -0.7
PCDHA9-202ENST00000532602 C20orf197Q8N268 126 aa10.66□□□□□ -0.7
PCDHA9-202ENST00000532602 TLN2Q9Y4G6 2542 aa10.66□□□□□ -0.7
PCDHA9-202ENST00000532602 C3orf22Q8N5N4 141 aa10.65□□□□□ -0.7
PCDHA9-202ENST00000532602 MRPS12O15235 138 aaKnown RBP10.65□□□□□ -0.7
PCDHA9-202ENST00000532602 RNASE8Q8TDE3 154 aaKnown RBP10.65□□□□□ -0.71
PCDHA9-202ENST00000532602 IGLV9-49A0A0B4J1Y8 123 aa10.65□□□□□ -0.71
PCDHA9-202ENST00000532602 M0QXV9 152 aa10.64□□□□□ -0.71
PCDHA9-202ENST00000532602 Q6ZTC4 211 aa10.64□□□□□ -0.71
PCDHA9-202ENST00000532602 ZNF462Q96JM2 2506 aa10.64□□□□□ -0.71
PCDHA9-202ENST00000532602 IGLV5-52A0A0A0MRZ9 124 aa10.63□□□□□ -0.71
PCDHA9-202ENST00000532602 NHLRC4P0CG21 123 aaPredicted RBP10.63□□□□□ -0.71
PCDHA9-202ENST00000532602 SMIM11BQ8TCY0 68 aa10.63□□□□□ -0.71
PCDHA9-202ENST00000532602 FSHBP01225 129 aa10.62□□□□□ -0.71
PCDHA9-202ENST00000532602 LINC00242Q5T6M2 205 aa10.62□□□□□ -0.71
PCDHA9-202ENST00000532602 F8WDY8 70 aa10.62□□□□□ -0.71
PCDHA9-202ENST00000532602 LST1O00453 97 aa10.62□□□□□ -0.71
PCDHA9-202ENST00000532602 FN1P02751 2386 aaKnown RBP10.62□□□□□ -0.71
PCDHA9-202ENST00000532602 C10orf25Q5T742 122 aa10.61□□□□□ -0.71
PCDHA9-202ENST00000532602 UQCRQO14949 82 aa10.61□□□□□ -0.71
PCDHA9-202ENST00000532602 UNQ6190/PRO20217Q6UXQ8 127 aa10.61□□□□□ -0.71
PCDHA9-202ENST00000532602 IGIPA6NJ69 53 aa10.6□□□□□ -0.71
PCDHA9-202ENST00000532602 WFDC13Q8IUB5 93 aa10.6□□□□□ -0.71
PCDHA9-202ENST00000532602 CEP295Q9C0D2 2601 aa10.6□□□□□ -0.71
PCDHA9-202ENST00000532602 FAM19A3Q7Z5A8 133 aa10.6□□□□□ -0.71
PCDHA9-202ENST00000532602 FHL2Q14192 279 aa10.6□□□□□ -0.71
PCDHA9-202ENST00000532602 PRR15LQ9BU68 103 aa10.6□□□□□ -0.71
PCDHA9-202ENST00000532602 Q8N9L7 120 aa10.59□□□□□ -0.71
PCDHA9-202ENST00000532602 YPEL4Q96NS1 127 aa10.59□□□□□ -0.71
PCDHA9-202ENST00000532602 NDUFV3P56181 108 aaKnown RBP10.59□□□□□ -0.71
PCDHA9-202ENST00000532602 C1orf134Q5TEV5 83 aa10.59□□□□□ -0.71
PCDHA9-202ENST00000532602 POM121L12Q8N7R1 296 aa10.59□□□□□ -0.71
PCDHA9-202ENST00000532602 C6orf223Q8N319 242 aa10.58□□□□□ -0.72
PCDHA9-202ENST00000532602 CSDC2Q9Y534 153 aaKnown RBP10.58□□□□□ -0.72
PCDHA9-202ENST00000532602 PTPRBP23467 1997 aa10.57□□□□□ -0.72
PCDHA9-202ENST00000532602 FAM236DA0A1B0GTK5 79 aa10.57□□□□□ -0.72
PCDHA9-202ENST00000532602 FAM236CP0DP71 79 aa10.57□□□□□ -0.72
PCDHA9-202ENST00000532602 ANKRD11Q6UB99 2663 aaPredicted RBP10.57□□□□□ -0.72
PCDHA9-202ENST00000532602 C9orf116Q5BN46 136 aaPredicted RBP10.57□□□□□ -0.72
PCDHA9-202ENST00000532602 REG3GQ6UW15 175 aa10.57□□□□□ -0.72
PCDHA9-202ENST00000532602 SMIM1B2RUZ4 78 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms