RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TMEM191AQ9H0A3 160 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 LPAR5Q9H1C0 372 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 CCDC167Q9P0B6 97 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 LY96Q9Y6Y9 160 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 LPAP08519 4548 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 TRAV27A0A087WT01 109 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 IGLV3-32A0A0A0MS00 114 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 PNMA8CA0A1B0GUJ8 204 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 K7ERJ3 54 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 HBDP02042 147 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 PMP2P02689 132 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 MT-ND4LP03901 98 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 MT-ND6P03923 174 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 S100A8P05109 93 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 TRGC1P0CF51 173 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 IGLC6P0CF74 106 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 TPT1P13693 172 aaKnown RBP1.02□□□□□ -2.25
CD44-233ENST00000531141 HLA-DRB4P13762 266 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 FABP4P15090 132 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 ZNF93P35789 620 aaPredicted RBP1.02□□□□□ -2.25
CD44-233ENST00000531141 GUCA1AP43080 201 aaPredicted RBP1.02□□□□□ -2.25
CD44-233ENST00000531141 AKR1D1P51857 326 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 FOXA3P55318 350 aaPredicted RBP1.02□□□□□ -2.25
CD44-233ENST00000531141 ZNF345Q14585 488 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 LINC00322Q6ZN03 302 aaPredicted RBP1.02□□□□□ -2.25
CD44-233ENST00000531141 TMEM91Q6ZNR0 172 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 Q6ZQT0 140 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 VMO1Q7Z5L0 202 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 TEN1Q86WV5 123 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 LINC00301Q8NCQ3 95 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 OR5D14Q8NGL3 314 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 C10orf82Q8WW14 230 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 CHCHD1Q96BP2 118 aaKnown RBP1.02□□□□□ -2.25
CD44-233ENST00000531141 SPANXDQ9BXN6 97 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 BANF2Q9H503 90 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 TAF9BQ9HBM6 251 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 HLA-DRB4X5D2U9 266 aa1.02□□□□□ -2.25
CD44-233ENST00000531141 LOC107986453A0A1B0GWG9 222 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 ZNF670-ZNF695F2Z2N8 137 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 CDC42EP2O14613 210 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 IFNA17P01571 189 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 RBP4P02753 201 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 TCRAP04437 139 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 SLC25A5P05141 298 aaKnown RBP1.01□□□□□ -2.25
CD44-233ENST00000531141 LINC00694P0DN24 101 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 CRYGAP11844 174 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 FGF7P21781 194 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 ROMO1P60602 79 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 PRB3Q04118 309 aaPredicted RBP1.01□□□□□ -2.25
CD44-233ENST00000531141 CDK5R1Q15078 307 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 NEDD8Q15843 81 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 DEFB136Q30KP8 78 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 SPRNQ5BIV9 151 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 RNASE10Q5GAN6 216 aaKnown RBP1.01□□□□□ -2.25
CD44-233ENST00000531141 GLIPR1L1Q6UWM5 242 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 C3orf62Q6ZUJ4 267 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 COPS9Q8WXC6 57 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 HYLS1Q96M11 299 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 OR4C12Q96R67 309 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 C12orf57Q99622 126 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 RETNLBQ9BQ08 111 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 SLC50A1Q9BRV3 221 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 PDCD10Q9BUL8 212 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 SLC35B3Q9H1N7 401 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 RERGLQ9H628 205 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 SAR1AQ9NR31 198 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 METTL1Q9UBP6 276 aaKnown RBP1.01□□□□□ -2.25
CD44-233ENST00000531141 TNFSF18Q9UNG2 199 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 TPRKBQ9Y3C4 175 aa1.01□□□□□ -2.25
CD44-233ENST00000531141 TNXBP22105 4242 aa1□□□□□ -2.25
CD44-233ENST00000531141 A0A087WSZ3 146 aa1□□□□□ -2.25
CD44-233ENST00000531141 hDV103S1A0JD37 113 aa1□□□□□ -2.25
CD44-233ENST00000531141 C9orf170A2RU37 121 aa1□□□□□ -2.25
CD44-233ENST00000531141 E7EUB6 86 aa1□□□□□ -2.25
CD44-233ENST00000531141 GNG7O60262 68 aa1□□□□□ -2.25
CD44-233ENST00000531141 UBL3O95164 117 aa1□□□□□ -2.25
CD44-233ENST00000531141 TRACP01848 142 aa1□□□□□ -2.25
CD44-233ENST00000531141 SHBGP04278 402 aa1□□□□□ -2.25
CD44-233ENST00000531141 DEFA4P12838 97 aa1□□□□□ -2.25
CD44-233ENST00000531141 ZNF25P17030 456 aaPredicted RBP1□□□□□ -2.25
CD44-233ENST00000531141 ETV6P41212 452 aa1□□□□□ -2.25
CD44-233ENST00000531141 SSR2P43308 183 aa1□□□□□ -2.25
CD44-233ENST00000531141 GNG2P59768 71 aa1□□□□□ -2.25
CD44-233ENST00000531141 KRTAP10-4P60372 401 aaPredicted RBP1□□□□□ -2.25
CD44-233ENST00000531141 DIAPH2-AS1Q14236 149 aa1□□□□□ -2.25
CD44-233ENST00000531141 LINC01545Q5VT33 79 aa1□□□□□ -2.25
CD44-233ENST00000531141 C2orf82Q6UX34 121 aa1□□□□□ -2.25
CD44-233ENST00000531141 IZUMO2Q6UXV1 221 aa1□□□□□ -2.25
CD44-233ENST00000531141 C10orf111Q8N326 155 aa1□□□□□ -2.25
CD44-233ENST00000531141 C15orf53Q8NAA6 179 aa1□□□□□ -2.25
CD44-233ENST00000531141 OR5AK2Q8NH90 309 aa1□□□□□ -2.25
CD44-233ENST00000531141 TMEM254Q8TBM7 123 aa1□□□□□ -2.25
CD44-233ENST00000531141 C4orf3Q8WVX3 66 aa1□□□□□ -2.25
CD44-233ENST00000531141 PPP3R2Q96LZ3 170 aa1□□□□□ -2.25
CD44-233ENST00000531141 GNG8Q9UK08 70 aa1□□□□□ -2.25
CD44-233ENST00000531141 MPC1Q9Y5U8 109 aa1□□□□□ -2.25
CD44-233ENST00000531141 LHFPL6Q9Y693 200 aa1□□□□□ -2.25
CD44-233ENST00000531141 NEBP20929 6669 aa1□□□□□ -2.25
CD44-233ENST00000531141 IGKV1D-42A0A075B6H8 117 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 TRBV20-1A0A075B6N2 111 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms