RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 LINC01560Q8TB33 94 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 DSCAML1Q8TD84 2053 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 AKAP13Q12802 2813 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 ITPR1Q14643 2758 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 LOC110117498A0A087WWA1 95 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 M0QY20 66 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 CCL3L1P16619 93 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 PDE6GP18545 87 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 Q9H8V8 135 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 NACAE9PAV3 2078 aa4.13□□□□□ -1.75
CD44-225ENST00000527326 A0A087WZ39 114 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 IGHV3-72A0A0B4J1Y9 119 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 C8orf87E5RJ46 101 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 H3BQ85 93 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 ATP11AUNQ6ZP68 121 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 Q6ZRP5 223 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 DEFB124Q8NES8 71 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 SMIM11BQ8TCY0 68 aa4.12□□□□□ -1.75
CD44-225ENST00000527326 ITLN2Q8WWU7 325 aaPredicted RBP4.12□□□□□ -1.75
CD44-225ENST00000527326 IGSF10Q6WRI0 2623 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 IGLV3-9A0A075B6K5 115 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 SPRY3O43610 288 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 IGHV1-8P0DP01 117 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 VPREB1P12018 145 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 ZFP36P26651 326 aaKnown RBP4.11□□□□□ -1.75
CD44-225ENST00000527326 RPL36AP83881 106 aaKnown RBP4.11□□□□□ -1.75
CD44-225ENST00000527326 SYCNQ0VAF6 134 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 CLEC19AQ6UXS0 136 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 LCA10Q71F78 164 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 FAM19A3Q7Z5A8 133 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 C11orf72Q8NBR9 251 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 DEFB108BQ8NET1 73 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 RPL36ALQ969Q0 106 aaKnown RBP4.11□□□□□ -1.75
CD44-225ENST00000527326 KRTAP9-8Q9BYQ0 159 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 TTTY12Q9BZ98 90 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 USP9XQ93008 2570 aaPredicted RBP4.11□□□□□ -1.75
CD44-225ENST00000527326 PRRC2AP48634 2157 aaKnown RBP4.11□□□□□ -1.75
CD44-225ENST00000527326 HECTD1Q9ULT8 2610 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 TENM4Q6N022 2769 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 ACACAQ13085 2346 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 CELSR3Q9NYQ7 3312 aa4.11□□□□□ -1.75
CD44-225ENST00000527326 MYO18BQ8IUG5 2567 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 CACNA1EQ15878 2313 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 COL27A1Q8IZC6 1860 aaPredicted RBP4.1□□□□□ -1.75
CD44-225ENST00000527326 TRAV22A0A0B4J277 110 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 BPY2O14599 106 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 GNRH2O43555 120 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 ECSCRQ19T08 205 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 KLK9Q2XQG4 91 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 KRTAP15-1Q3LI76 137 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 C7orf65Q6ZTY9 151 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 LINC00269Q8N2A0 174 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 LINC00337Q8N6G1 96 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 NPBQ8NG41 125 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 FAM104AQ969W3 186 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 SND1-IT1Q9HBX3 110 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 KLK9Q9UKQ9 250 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 NAV3Q8IVL0 2385 aa4.1□□□□□ -1.75
CD44-225ENST00000527326 TEP1Q99973 2627 aaKnown RBP4.09□□□□□ -1.75
CD44-225ENST00000527326 IGHV1OR15-1A0A075B7D0 117 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 CLPSL1A2RUU4 121 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 LY6G6DO95868 133 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 IGLV1-47P01700 117 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 IGHV1-46P01743 117 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 HAMPP81172 84 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 KRTAP1-1Q07627 177 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 Q6ZQT0 140 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 C9orf106Q8NAJ2 232 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 BBC3Q96PG8 261 aaPredicted RBP4.09□□□□□ -1.75
CD44-225ENST00000527326 CYP4F30PQ9H0H9 118 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 CDKN2A-AS1Q9UH64 79 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 S4R3C0 116 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 DMXL2Q8TDJ6 3036 aa4.09□□□□□ -1.75
CD44-225ENST00000527326 IGKV2-28A0A075B6P5 120 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 NBPF19A0A087WUL8 3843 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 TRBV10-1A0A0K0K1A3 114 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 A6NN06 94 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 SMIM1B2RUZ4 78 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 K7EMT4 169 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 URB1O60287 2271 aaKnown RBP4.08□□□□□ -1.76
CD44-225ENST00000527326 IGKV2D-28P01615 120 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 GNLYP22749 145 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 C9orf66Q5T8R8 295 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 PRR14LQ5THK1 2151 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 FAM74A4Q5TZK3 123 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 DEFB104AQ8WTQ1 72 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 DIRC1Q969H9 104 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 ESM1Q9NQ30 184 aa4.08□□□□□ -1.76
CD44-225ENST00000527326 IGHV3-38A0A0C4DH36 116 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 KLLNB2CW77 178 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 J3QKU1 62 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 PSPHP1O15172 72 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 SPINK14Q6IE38 97 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 Q8N814 137 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 CHCHD7Q9BUK0 85 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 KAAG1Q9UBP8 84 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 ZNF462Q96JM2 2506 aa4.07□□□□□ -1.76
CD44-225ENST00000527326 SEC16AO15027 2179 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 FREM1Q5H8C1 2179 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 TRBV6-8A0A0A6YYG3 113 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms