RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 SUMO4Q6EEV6 95 aa5.35□□□□□ -1.55
HDAC9-227ENST00000523867 UBE2D4Q9Y2X8 147 aa5.35□□□□□ -1.55
HDAC9-227ENST00000523867 RBMY1BA6NDE4 496 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 RBMY1EA6NEQ0 496 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 RBMY1DP0C7P1 496 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 RBMY1A1P0DJD3 496 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 GNLYP22749 145 aa5.35□□□□□ -1.55
HDAC9-227ENST00000523867 POLR2KP53803 58 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 RPL39P62891 51 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 RBMY1FQ15415 496 aaKnown RBP5.35□□□□□ -1.55
HDAC9-227ENST00000523867 ATP5EP2Q5VTU8 51 aa5.35□□□□□ -1.55
HDAC9-227ENST00000523867 ESM1Q9NQ30 184 aa5.35□□□□□ -1.55
HDAC9-227ENST00000523867 HECTD1Q9ULT8 2610 aa5.35□□□□□ -1.55
HDAC9-227ENST00000523867 H3BUA1 57 aa5.34□□□□□ -1.55
HDAC9-227ENST00000523867 ATP5EP56381 51 aaPredicted RBP5.34□□□□□ -1.55
HDAC9-227ENST00000523867 C19orf73Q9NVV2 129 aa5.34□□□□□ -1.55
HDAC9-227ENST00000523867 C22orf24Q9Y442 160 aa5.34□□□□□ -1.55
HDAC9-227ENST00000523867 PTPN13Q12923 2485 aa5.34□□□□□ -1.55
HDAC9-227ENST00000523867 KLLNB2CW77 178 aa5.34□□□□□ -1.55
HDAC9-227ENST00000523867 S100A7L2Q5SY68 101 aa5.34□□□□□ -1.55
HDAC9-227ENST00000523867 TRAV12-3A0A0B4J271 114 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 DNAL4O96015 105 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 FAM74A4Q5TZK3 123 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 FP248Q71RG6 208 aaPredicted RBP5.33□□□□□ -1.56
HDAC9-227ENST00000523867 SPG11Q96JI7 2443 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 NAV2Q8IVL1 2488 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 MUC4Q99102 2169 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 H3BUX3 64 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 IGHV3-30-3P0DP02 117 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 XCL1P47992 114 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 Q6ZRU5 148 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 OBSCN-AS1Q96MR7 158 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 XCL2Q9UBD3 114 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 LAMTOR3Q9UHA4 124 aa5.33□□□□□ -1.56
HDAC9-227ENST00000523867 TRBV6-5A0A0K0K1A5 114 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 TRBV27A0A0K0K1C4 114 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 TRBV10-3A0A0K0K1G6 114 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 BLCAPP62952 87 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 ADAMTSL4-AS1Q5T5F5 129 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 IGHV1-58A0A0C4DH39 117 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 H7BZZ5 65 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 IGHV4-38-2P0DP08 117 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 Q6ZSV7 163 aa5.32□□□□□ -1.56
HDAC9-227ENST00000523867 IGKV3D-7A0A0C4DH55 119 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 ADARB2-AS1A8MUL3 147 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 CENPEQ02224 2701 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 CRYBG3Q68DQ2 2970 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 A6NDX4 124 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 NDUFC1O43677 76 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 IGKV3-20P01619 116 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 KLKP1Q107X0 134 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 C11orf68Q9H3H3 251 aaKnown RBP5.31□□□□□ -1.56
HDAC9-227ENST00000523867 NDUFA12Q9UI09 145 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 FLNCQ14315 2725 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 CELSR2Q9HCU4 2923 aa5.31□□□□□ -1.56
HDAC9-227ENST00000523867 IGHV3-16A0A0C4DH30 117 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 IGHV4-61A0A0C4DH41 118 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 FAM229AH3BQW9 127 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 IGLV1-40P01703 118 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 CFHR3Q02985 330 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 FAM19A3Q7Z5A8 133 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 OPRPNQ99935 248 aaPredicted RBP5.3□□□□□ -1.56
HDAC9-227ENST00000523867 M0QY20 66 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 CIRBPQ14011 172 aaKnown RBP5.3□□□□□ -1.56
HDAC9-227ENST00000523867 ZNF580Q9UK33 172 aa5.3□□□□□ -1.56
HDAC9-227ENST00000523867 TRAV7A0A075B6U4 112 aa5.29□□□□□ -1.56
HDAC9-227ENST00000523867 A0A087WVE0 104 aa5.29□□□□□ -1.56
HDAC9-227ENST00000523867 C19orf84I3L1E1 186 aa5.29□□□□□ -1.56
HDAC9-227ENST00000523867 LINC00846Q9NV44 126 aa5.29□□□□□ -1.56
HDAC9-227ENST00000523867 SNRPD3P62318 126 aaKnown RBP5.29□□□□□ -1.56
HDAC9-227ENST00000523867 LYPD5Q6UWN5 251 aa5.29□□□□□ -1.56
HDAC9-227ENST00000523867 C20orf197Q8N268 126 aa5.29□□□□□ -1.56
HDAC9-227ENST00000523867 UTP20O75691 2785 aaKnown RBP5.29□□□□□ -1.56
HDAC9-227ENST00000523867 IGHV1OR15-1A0A075B7D0 117 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 A0A0J9YXV3 536 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 PIK3CD-AS1Q5SR53 167 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 C20orf203Q8NBC4 194 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 SPINK13Q1W4C9 94 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 PRR15Q8IV56 129 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 Q8N2B8 174 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 ABCA2Q9BZC7 2435 aa5.28□□□□□ -1.56
HDAC9-227ENST00000523867 CCKP06307 115 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.27□□□□□ -1.57
HDAC9-227ENST00000523867 DOPEY2Q9Y3R5 2298 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 IGLV4-3A0A075B6K6 122 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 TRBV7-6A0A0J9YX20 115 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 NDUFA1O15239 70 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 CSMD2Q7Z408 3487 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 UNC79Q9P2D8 2635 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 MSMBP08118 114 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 RPL28P46779 137 aaKnown RBP5.27□□□□□ -1.57
HDAC9-227ENST00000523867 LINC00308Q8TCZ7 52 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 CCL19Q99731 98 aa5.27□□□□□ -1.57
HDAC9-227ENST00000523867 USP9YO00507 2555 aaPredicted RBP5.26□□□□□ -1.57
HDAC9-227ENST00000523867 TEX15Q9BXT5 2789 aa5.26□□□□□ -1.57
HDAC9-227ENST00000523867 A0A087WZ39 114 aa5.26□□□□□ -1.57
HDAC9-227ENST00000523867 K7EQG2 157 aa5.26□□□□□ -1.57
HDAC9-227ENST00000523867 MYO9AB2RTY4 2548 aa5.26□□□□□ -1.57
HDAC9-227ENST00000523867 CD28P10747 220 aa5.26□□□□□ -1.57
HDAC9-227ENST00000523867 Q6ZVQ6 151 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms