RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 AMMECR1LQ6DCA0 310 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 RNASEKQ6P5S7 137 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 TMEM136Q6ZRR5 245 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 PGLYRP4Q96LB8 373 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 TRAV9-1A0A075B6T8 112 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 A0A087WZ39 114 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 IGHV1-58A0A0C4DH39 117 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 ZNF561-AS1K7EIQ3 104 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 KRTAP1-4P0C5Y4 121 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 TRGC1P0CF51 173 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 COTL1Q14019 142 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 BTF3L4Q96K17 158 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 AP1S3Q96PC3 154 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 BIN3Q9NQY0 253 aa6.64□□□□□ -1.35
LIMCH1-221ENST00000515785 A8MWL6 223 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BKO60814 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BJP06899 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 OR5AL1P0C617 328 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BOP23527 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BBP33778 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BDP58876 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BCP62807 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 FABP9Q0Z7S8 132 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST2H2BEQ16778 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 RASL11AQ6T310 242 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 LYZL1Q6UWQ5 148 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 KRTAP11-1Q8IUC1 163 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BHQ93079 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BNQ99877 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 HIST1H2BMQ99879 126 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 TPPP3Q9BW30 176 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 NAT8BQ9UHF3 227 aa6.63□□□□□ -1.35
LIMCH1-221ENST00000515785 MUC17Q685J3 4493 aa6.62□□□□□ -1.35
LIMCH1-221ENST00000515785 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-221ENST00000515785 IGKV2-29A2NJV5 120 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-221ENST00000515785 C1orf196B1AJZ1 125 aa6.62□□□□□ -1.35
LIMCH1-221ENST00000515785 CCL25O15444 150 aa6.62□□□□□ -1.35
LIMCH1-221ENST00000515785 NIT2Q9NQR4 276 aa6.62□□□□□ -1.35
LIMCH1-221ENST00000515785 IGLV4-69A0A075B6H9 119 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 F2Z2F3 143 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 CTRLP40313 264 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 RPL13AP40429 203 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 CAMPP49913 170 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 RPL18AQ02543 176 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 KIAA1644Q3SXP7 199 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 GATD1Q8NB37 220 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 TRAPPC1Q9Y5R8 145 aa6.61□□□□□ -1.35
LIMCH1-221ENST00000515785 NUPR1O60356 82 aa6.6□□□□□ -1.35
LIMCH1-221ENST00000515785 FGF6P10767 208 aa6.6□□□□□ -1.35
LIMCH1-221ENST00000515785 LINC00310P59036 64 aa6.6□□□□□ -1.35
LIMCH1-221ENST00000515785 OR5A1Q8NGJ0 315 aa6.6□□□□□ -1.35
LIMCH1-221ENST00000515785 OPRPNQ99935 248 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-221ENST00000515785 GNB1LQ9BYB4 327 aa6.6□□□□□ -1.35
LIMCH1-221ENST00000515785 LINC00959A0A1B0GUT2 108 aa6.59□□□□□ -1.35
LIMCH1-221ENST00000515785 C5orf52A6NGY3 159 aa6.59□□□□□ -1.35
LIMCH1-221ENST00000515785 IFITM10A6NMD0 228 aa6.59□□□□□ -1.35
LIMCH1-221ENST00000515785 RPS20P60866 119 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-221ENST00000515785 RAB5BP61020 215 aa6.59□□□□□ -1.35
LIMCH1-221ENST00000515785 SNRPEP62304 92 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-221ENST00000515785 A0A1B0GUT8 65 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 FAM168BA1KXE4 195 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 NDUFA6P56556 154 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 ATP5L2Q7Z4Y8 100 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 CAMK2N2Q96S95 79 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 CNFNQ9BYD5 112 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 CDIP1Q9H305 208 aa6.58□□□□□ -1.36
LIMCH1-221ENST00000515785 APOMO95445 188 aa6.57□□□□□ -1.36
LIMCH1-221ENST00000515785 NTF3P20783 257 aa6.57□□□□□ -1.36
LIMCH1-221ENST00000515785 HBBP68871 147 aa6.57□□□□□ -1.36
LIMCH1-221ENST00000515785 SS18Q15532 418 aa6.57□□□□□ -1.36
LIMCH1-221ENST00000515785 URB1-AS1Q96HZ7 61 aa6.57□□□□□ -1.36
LIMCH1-221ENST00000515785 RETNLBQ9BQ08 111 aa6.57□□□□□ -1.36
LIMCH1-221ENST00000515785 APCSP02743 223 aa6.56□□□□□ -1.36
LIMCH1-221ENST00000515785 MALP21145 153 aa6.56□□□□□ -1.36
LIMCH1-221ENST00000515785 RIGQ13278 110 aa6.56□□□□□ -1.36
LIMCH1-221ENST00000515785 TMEM101Q96IK0 257 aa6.56□□□□□ -1.36
LIMCH1-221ENST00000515785 ALKBH7Q9BT30 221 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-221ENST00000515785 LINC01547P58512 204 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-221ENST00000515785 COX19Q49B96 90 aa6.55□□□□□ -1.36
LIMCH1-221ENST00000515785 COA6Q5JTJ3 125 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-221ENST00000515785 CD164L2Q6UWJ8 174 aa6.55□□□□□ -1.36
LIMCH1-221ENST00000515785 FAM19A5Q7Z5A7 132 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-221ENST00000515785 AMN1Q8IY45 258 aa6.55□□□□□ -1.36
LIMCH1-221ENST00000515785 XKRY2A2RUG3 117 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 SMKR1H3BMG3 65 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 RAB4AP20338 218 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 TWIST1Q15672 202 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 MRPL51Q4U2R6 128 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 FAM104BQ5XKR9 115 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 HIST3H2BBQ8N257 126 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 C18orf32Q8TCD1 76 aa6.54□□□□□ -1.36
LIMCH1-221ENST00000515785 H7C423 109 aa6.53□□□□□ -1.36
LIMCH1-221ENST00000515785 UBE2BP63146 152 aa6.53□□□□□ -1.36
LIMCH1-221ENST00000515785 PDZD11Q5EBL8 140 aa6.53□□□□□ -1.36
LIMCH1-221ENST00000515785 RPL39LQ96EH5 51 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-221ENST00000515785 TMEM191AQ9H0A3 160 aa6.53□□□□□ -1.36
LIMCH1-221ENST00000515785 COX7A2LO14548 114 aa6.52□□□□□ -1.37
LIMCH1-221ENST00000515785 NCR2O95944 276 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms