RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SPTBN2O15020 2390 aa0.41□□□□□ -2.34
NUP54-215ENST00000514313 SEC11AP67812 179 aa0.41□□□□□ -2.34
NUP54-215ENST00000514313 WFDC2Q14508 124 aa0.41□□□□□ -2.34
NUP54-215ENST00000514313 C10orf113Q5VZT2 155 aa0.41□□□□□ -2.34
NUP54-215ENST00000514313 MDN1Q9NU22 5596 aa0.41□□□□□ -2.34
NUP54-215ENST00000514313 ABCC5O15440 1437 aa0.4□□□□□ -2.34
NUP54-215ENST00000514313 FAM223BA6NKX1 122 aa0.4□□□□□ -2.35
NUP54-215ENST00000514313 TRAV30A0A087WSZ9 112 aa0.39□□□□□ -2.35
NUP54-215ENST00000514313 RBP2P50120 134 aa0.39□□□□□ -2.35
NUP54-215ENST00000514313 PLCE1Q9P212 2302 aa0.39□□□□□ -2.35
NUP54-215ENST00000514313 NHSL1Q5SYE7 1610 aa0.38□□□□□ -2.35
NUP54-215ENST00000514313 SYNE2Q8WXH0 6885 aaKnown RBP0.38□□□□□ -2.35
NUP54-215ENST00000514313 C2CD3Q4AC94 2353 aa0.38□□□□□ -2.35
NUP54-215ENST00000514313 TRBV6-1A0A0K0K1D8 114 aa0.37□□□□□ -2.35
NUP54-215ENST00000514313 A0A1B0GWA3 101 aa0.36□□□□□ -2.35
NUP54-215ENST00000514313 PIGYQ3MUY2 71 aa0.36□□□□□ -2.35
NUP54-215ENST00000514313 MYO7BQ6PIF6 2116 aa0.36□□□□□ -2.35
NUP54-215ENST00000514313 ADGRL2O95490 1459 aa0.35□□□□□ -2.35
NUP54-215ENST00000514313 CHD9Q3L8U1 2897 aa0.35□□□□□ -2.35
NUP54-215ENST00000514313 FXYD6-FXYD2A0A087WZ82 144 aa0.35□□□□□ -2.35
NUP54-215ENST00000514313 GNGT2O14610 69 aa0.35□□□□□ -2.35
NUP54-215ENST00000514313 S100A10P60903 97 aa0.35□□□□□ -2.35
NUP54-215ENST00000514313 TOP2BQ02880 1626 aa0.35□□□□□ -2.35
NUP54-215ENST00000514313 KMT2DO14686 5537 aa0.34□□□□□ -2.35
NUP54-215ENST00000514313 DIP2CQ9Y2E4 1556 aa0.34□□□□□ -2.36
NUP54-215ENST00000514313 ARHGEF12Q9NZN5 1544 aa0.33□□□□□ -2.36
NUP54-215ENST00000514313 SAA2P0DJI9 122 aaPredicted RBP0.33□□□□□ -2.36
NUP54-215ENST00000514313 PAPPAQ13219 1627 aa0.33□□□□□ -2.36
NUP54-215ENST00000514313 FSIP2Q5CZC0 6907 aa0.32□□□□□ -2.36
NUP54-215ENST00000514313 Q5VSD8 79 aa0.32□□□□□ -2.36
NUP54-215ENST00000514313 FDCSPQ8NFU4 85 aa0.32□□□□□ -2.36
NUP54-215ENST00000514313 POLA1P09884 1462 aaPredicted RBP0.32□□□□□ -2.36
NUP54-215ENST00000514313 MACF1Q9UPN3 7388 aaKnown RBP0.32□□□□□ -2.36
NUP54-215ENST00000514313 SCN7AQ01118 1682 aa0.32□□□□□ -2.36
NUP54-215ENST00000514313 DEFB109BQ30KR1 87 aa0.31□□□□□ -2.36
NUP54-215ENST00000514313 LINC01600Q96MT4 127 aa0.31□□□□□ -2.36
NUP54-215ENST00000514313 USF3Q68DE3 2245 aa0.31□□□□□ -2.36
NUP54-215ENST00000514313 MAST4O15021 2626 aa0.31□□□□□ -2.36
NUP54-215ENST00000514313 MT-ATP8P03928 68 aa0.3□□□□□ -2.36
NUP54-215ENST00000514313 LCN9Q8WX39 176 aa0.3□□□□□ -2.36
NUP54-215ENST00000514313 CHD1O14646 1710 aa0.3□□□□□ -2.36
NUP54-215ENST00000514313 ABCA3Q99758 1704 aa0.3□□□□□ -2.36
NUP54-215ENST00000514313 NCOR2Q9Y618 2525 aa0.29□□□□□ -2.36
NUP54-215ENST00000514313 SPRR1AP35321 89 aa0.29□□□□□ -2.36
NUP54-215ENST00000514313 PRO1933Q9H354 126 aa0.29□□□□□ -2.36
NUP54-215ENST00000514313 COL4A6Q14031 1691 aa0.29□□□□□ -2.36
NUP54-215ENST00000514313 TOPAZ1Q8N9V7 1692 aa0.29□□□□□ -2.36
NUP54-215ENST00000514313 MAGI1Q96QZ7 1491 aaPredicted RBP0.29□□□□□ -2.36
NUP54-215ENST00000514313 MRC2Q9UBG0 1479 aa0.29□□□□□ -2.36
NUP54-215ENST00000514313 HRNRQ86YZ3 2850 aaPredicted RBP0.28□□□□□ -2.36
NUP54-215ENST00000514313 PTPRQQ9UMZ3 2332 aa0.27□□□□□ -2.37
NUP54-215ENST00000514313 A0A0G2JND7 137 aa0.26□□□□□ -2.37
NUP54-215ENST00000514313 ACBD7Q8N6N7 88 aa0.26□□□□□ -2.37
NUP54-215ENST00000514313 CACFD1Q9UGQ2 172 aa0.26□□□□□ -2.37
NUP54-215ENST00000514313 CNTLNQ9NXG0 1405 aa0.26□□□□□ -2.37
NUP54-215ENST00000514313 PPRC1Q5VV67 1664 aaKnown RBP0.26□□□□□ -2.37
NUP54-215ENST00000514313 GOLGA4Q13439 2230 aaKnown RBP0.26□□□□□ -2.37
NUP54-215ENST00000514313 ZNF292O60281 2723 aa0.25□□□□□ -2.37
NUP54-215ENST00000514313 MPC2O95563 127 aa0.25□□□□□ -2.37
NUP54-215ENST00000514313 LINC00846Q9NV44 126 aa0.25□□□□□ -2.37
NUP54-215ENST00000514313 UNC79Q9P2D8 2635 aa0.24□□□□□ -2.37
NUP54-215ENST00000514313 C1orf167Q5SNV9 1468 aa0.24□□□□□ -2.37
NUP54-215ENST00000514313 LINC00959A0A1B0GUT2 108 aa0.24□□□□□ -2.37
NUP54-215ENST00000514313 DEFB123Q8N688 67 aa0.24□□□□□ -2.37
NUP54-215ENST00000514313 PMCHL2Q9BQD1 86 aa0.24□□□□□ -2.37
NUP54-215ENST00000514313 TRBV7-4A0A0J9YYF1 115 aa0.23□□□□□ -2.37
NUP54-215ENST00000514313 NDUFC1O43677 76 aa0.23□□□□□ -2.37
NUP54-215ENST00000514313 AP4S1Q9Y587 144 aa0.23□□□□□ -2.37
NUP54-215ENST00000514313 NCMAPQ5T1S8 102 aa0.22□□□□□ -2.37
NUP54-215ENST00000514313 AKAP6Q13023 2319 aa0.22□□□□□ -2.37
NUP54-215ENST00000514313 TULP4Q9NRJ4 1543 aa0.22□□□□□ -2.37
NUP54-215ENST00000514313 CELSR1Q9NYQ6 3014 aa0.21□□□□□ -2.38
NUP54-215ENST00000514313 PKDREJQ9NTG1 2253 aa0.21□□□□□ -2.38
NUP54-215ENST00000514313 C7orf77A4D0Y5 90 aa0.21□□□□□ -2.38
NUP54-215ENST00000514313 PRDM15P57071 1507 aaPredicted RBP0.2□□□□□ -2.38
NUP54-215ENST00000514313 A0A087WVE0 104 aa0.2□□□□□ -2.38
NUP54-215ENST00000514313 ASIPP42127 132 aa0.2□□□□□ -2.38
NUP54-215ENST00000514313 COX6B1P14854 86 aa0.19□□□□□ -2.38
NUP54-215ENST00000514313 VAMP8Q9BV40 100 aa0.19□□□□□ -2.38
NUP54-215ENST00000514313 ANKRD36BQ8N2N9 1353 aa0.19□□□□□ -2.38
NUP54-215ENST00000514313 ZFHX3Q15911 3703 aa0.18□□□□□ -2.38
NUP54-215ENST00000514313 CSMD3Q7Z407 3707 aa0.18□□□□□ -2.38
NUP54-215ENST00000514313 TRBV25-1A0A075B6N4 114 aa0.18□□□□□ -2.38
NUP54-215ENST00000514313 TRGV9Q99603 122 aa0.18□□□□□ -2.38
NUP54-215ENST00000514313 IGSF10Q6WRI0 2623 aa0.17□□□□□ -2.38
NUP54-215ENST00000514313 WNK2Q9Y3S1 2297 aa0.17□□□□□ -2.38
NUP54-215ENST00000514313 MLH3Q9UHC1 1453 aa0.17□□□□□ -2.38
NUP54-215ENST00000514313 H7BZZ5 65 aa0.17□□□□□ -2.38
NUP54-215ENST00000514313 PDCD11Q14690 1871 aaKnown RBP0.17□□□□□ -2.38
NUP54-215ENST00000514313 NUP188Q5SRE5 1749 aa0.16□□□□□ -2.38
NUP54-215ENST00000514313 LINC00032P0C843 101 aa0.16□□□□□ -2.38
NUP54-215ENST00000514313 PMCHL1Q16048 86 aa0.16□□□□□ -2.38
NUP54-215ENST00000514313 DPY30Q9C005 99 aa0.16□□□□□ -2.38
NUP54-215ENST00000514313 SSPOA2VEC9 5147 aa0.15□□□□□ -2.38
NUP54-215ENST00000514313 HIVEP3Q5T1R4 2406 aa0.15□□□□□ -2.39
NUP54-215ENST00000514313 M0R143 59 aa0.15□□□□□ -2.39
NUP54-215ENST00000514313 SPRR1BP22528 89 aa0.15□□□□□ -2.39
NUP54-215ENST00000514313 GAPVD1Q14C86 1478 aa0.15□□□□□ -2.39
NUP54-215ENST00000514313 DOPEY2Q9Y3R5 2298 aa0.14□□□□□ -2.39
NUP54-215ENST00000514313 ATOX1O00244 68 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms