RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 RNF152Q8N8N0 203 aa6.97□□□□□ -1.29
VCAN-210ENST00000513960 SND1-IT1Q9HBX3 110 aa6.97□□□□□ -1.29
VCAN-210ENST00000513960 UTP20O75691 2785 aaKnown RBP6.97□□□□□ -1.29
VCAN-210ENST00000513960 SONP18583 2426 aaKnown RBP6.97□□□□□ -1.29
VCAN-210ENST00000513960 SMIM9A6NGZ8 99 aa6.96□□□□□ -1.29
VCAN-210ENST00000513960 NCR3O14931 201 aa6.96□□□□□ -1.29
VCAN-210ENST00000513960 SOSTDC1Q6X4U4 206 aa6.96□□□□□ -1.29
VCAN-210ENST00000513960 TLN2Q9Y4G6 2542 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 RPL36AP83881 106 aaKnown RBP6.96□□□□□ -1.3
VCAN-210ENST00000513960 S100A7L2Q5SY68 101 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 RPL36ALQ969Q0 106 aaKnown RBP6.96□□□□□ -1.3
VCAN-210ENST00000513960 FSHBP01225 129 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 RBMY1A1P0DJD3 496 aaKnown RBP6.96□□□□□ -1.3
VCAN-210ENST00000513960 RBMY1CP0DJD4 496 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 KRTAP10-9P60411 292 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 RBMY1FQ15415 496 aaKnown RBP6.96□□□□□ -1.3
VCAN-210ENST00000513960 C5orf47Q569G3 176 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.96□□□□□ -1.3
VCAN-210ENST00000513960 WFDC9Q8NEX5 89 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 KIR2DL5BQ8NHK3 375 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 Q96MF0 132 aa6.96□□□□□ -1.3
VCAN-210ENST00000513960 C18orf65Q6ZTR6 163 aa6.95□□□□□ -1.3
VCAN-210ENST00000513960 C11orf44Q8N8P7 122 aa6.95□□□□□ -1.3
VCAN-210ENST00000513960 ABCA12Q86UK0 2595 aa6.95□□□□□ -1.3
VCAN-210ENST00000513960 BBC3Q96PG8 261 aaPredicted RBP6.95□□□□□ -1.3
VCAN-210ENST00000513960 ZANQ9Y493 2812 aa6.94□□□□□ -1.3
VCAN-210ENST00000513960 TRAV13-2A0A0B4J235 113 aa6.94□□□□□ -1.3
VCAN-210ENST00000513960 LINC00242Q5T6M2 205 aa6.94□□□□□ -1.3
VCAN-210ENST00000513960 A0A0U1RQV1 116 aa6.94□□□□□ -1.3
VCAN-210ENST00000513960 HIST2H2BCQ6DN03 193 aa6.94□□□□□ -1.3
VCAN-210ENST00000513960 TRAV23DV6A0A075B6W5 121 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 TIMM17BO60830 172 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 ZNF843Q8N446 348 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 A0A087WYN8 130 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 C5orf38Q86SI9 138 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 JMJD1CQ15652 2540 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 TRGV2A0A075B6R0 118 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 LRRC75A-AS1Q8N1F1 130 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 RBMY1BA6NDE4 496 aaKnown RBP6.93□□□□□ -1.3
VCAN-210ENST00000513960 RBMY1EA6NEQ0 496 aaKnown RBP6.93□□□□□ -1.3
VCAN-210ENST00000513960 RBMY1DP0C7P1 496 aaKnown RBP6.93□□□□□ -1.3
VCAN-210ENST00000513960 RPL18AQ02543 176 aaKnown RBP6.93□□□□□ -1.3
VCAN-210ENST00000513960 DEFB121Q5J5C9 76 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 C4orf3Q8WVX3 66 aa6.93□□□□□ -1.3
VCAN-210ENST00000513960 SMIM1B2RUZ4 78 aa6.92□□□□□ -1.3
VCAN-210ENST00000513960 HRCT1Q6UXD1 115 aa6.92□□□□□ -1.3
VCAN-210ENST00000513960 USP24Q9UPU5 2620 aa6.92□□□□□ -1.3
VCAN-210ENST00000513960 A0A1W2PRX2 142 aa6.92□□□□□ -1.3
VCAN-210ENST00000513960 USP17L23D6RBM5 183 aa6.92□□□□□ -1.3
VCAN-210ENST00000513960 INSP01308 110 aa6.92□□□□□ -1.3
VCAN-210ENST00000513960 FN1P02751 2386 aaKnown RBP6.92□□□□□ -1.3
VCAN-210ENST00000513960 LINC00846Q9NV44 126 aa6.91□□□□□ -1.3
VCAN-210ENST00000513960 SMIM11BQ8TCY0 68 aa6.91□□□□□ -1.3
VCAN-210ENST00000513960 FAM104AQ969W3 186 aa6.91□□□□□ -1.3
VCAN-210ENST00000513960 MAP6D1Q9H9H5 199 aa6.91□□□□□ -1.3
VCAN-210ENST00000513960 CLPSL2Q6UWE3 100 aa6.9□□□□□ -1.3
VCAN-210ENST00000513960 GHRHP01286 108 aa6.9□□□□□ -1.3
VCAN-210ENST00000513960 HILS1P60008 231 aa6.9□□□□□ -1.3
VCAN-210ENST00000513960 C6orf226Q5I0X4 101 aa6.9□□□□□ -1.3
VCAN-210ENST00000513960 STHQ8IWL8 128 aa6.9□□□□□ -1.3
VCAN-210ENST00000513960 CSMD2Q7Z408 3487 aa6.9□□□□□ -1.31
VCAN-210ENST00000513960 C9orf129Q5T035 196 aaKnown RBP6.9□□□□□ -1.31
VCAN-210ENST00000513960 LINC00337Q8N6G1 96 aa6.9□□□□□ -1.31
VCAN-210ENST00000513960 COX7B2Q8TF08 81 aa6.9□□□□□ -1.31
VCAN-210ENST00000513960 CXCL5P42830 114 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 DEFB114Q30KQ6 69 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 C20orf197Q8N268 126 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 SERP2Q8N6R1 65 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 CR1P17927 2039 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 TMEM243Q9BU79 118 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 CYSTM1Q9H1C7 97 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 TEX15Q9BXT5 2789 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 OVOL2Q9BRP0 275 aa6.89□□□□□ -1.31
VCAN-210ENST00000513960 FBN2P35556 2912 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 Q6ZTI0 123 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 NOP10Q9NPE3 64 aaKnown RBP6.88□□□□□ -1.31
VCAN-210ENST00000513960 TRGV4A0A0C4DH28 118 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 MXRA5Q9NR99 2828 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 A8MTW9 85 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 F5H768 121 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 C4orf26Q17RF5 130 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 TMEM86BQ8N661 226 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 ORMDL1Q9P0S3 153 aa6.88□□□□□ -1.31
VCAN-210ENST00000513960 CCDC168Q8NDH2 2452 aa6.87□□□□□ -1.31
VCAN-210ENST00000513960 ENHOQ6UWT2 76 aa6.87□□□□□ -1.31
VCAN-210ENST00000513960 HAMPP81172 84 aa6.87□□□□□ -1.31
VCAN-210ENST00000513960 K7EQD1 137 aa6.87□□□□□ -1.31
VCAN-210ENST00000513960 LOC100131303A0A0U1RQF7 123 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 BRK1Q8WUW1 75 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 EPG5Q9HCE0 2579 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 CRYGAP11844 174 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 RPL35AP18077 110 aaKnown RBP6.86□□□□□ -1.31
VCAN-210ENST00000513960 XCL1P47992 114 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 TMEM258P61165 79 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 H0YGX0 51 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 CCL18P55774 89 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 LINC01600Q96MT4 127 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 LAMTOR3Q9UHA4 124 aa6.86□□□□□ -1.31
VCAN-210ENST00000513960 IGLV5-39A0A0G2JS06 123 aa6.85□□□□□ -1.31
VCAN-210ENST00000513960 DNAJC9-AS1A6NH13 148 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms