RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CCL25O15444 150 aa6.65□□□□□ -1.34
NUP54-203ENST00000504173 XCL1P47992 114 aa6.65□□□□□ -1.34
NUP54-203ENST00000504173 C2orf88Q9BSF0 95 aa6.65□□□□□ -1.34
NUP54-203ENST00000504173 VCX2Q9H322 139 aa6.65□□□□□ -1.34
NUP54-203ENST00000504173 VPS13BQ7Z7G8 4022 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 FAT1Q14517 4588 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 A0A087WTM6 91 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 EREGO14944 169 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 LINC00310P59036 64 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 ZC2HC1BQ5TFG8 222 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 KRTAP26-1Q6PEX3 210 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 FAM19A2Q8N3H0 131 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 BAALCQ8WXS3 180 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 AMELXQ99217 191 aa6.64□□□□□ -1.35
NUP54-203ENST00000504173 RNF213Q63HN8 5207 aa6.63□□□□□ -1.35
NUP54-203ENST00000504173 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.63□□□□□ -1.35
NUP54-203ENST00000504173 LECT2O14960 151 aa6.63□□□□□ -1.35
NUP54-203ENST00000504173 ATP5LO75964 103 aa6.63□□□□□ -1.35
NUP54-203ENST00000504173 PDZD11Q5EBL8 140 aa6.63□□□□□ -1.35
NUP54-203ENST00000504173 CD164L2Q6UWJ8 174 aa6.63□□□□□ -1.35
NUP54-203ENST00000504173 LINC00173Q6ZV60 143 aa6.63□□□□□ -1.35
NUP54-203ENST00000504173 LRCOL1A6NCL2 159 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 NUPR1O60356 82 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 UBE2D1P51668 147 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 NDUFA6P56556 154 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 FOXI1Q12951 378 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 WFDC2Q14508 124 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 PMVKQ15126 192 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 SERTAD4-AS1Q5TG53 156 aa6.62□□□□□ -1.35
NUP54-203ENST00000504173 USP17L23D6RBM5 183 aa6.61□□□□□ -1.35
NUP54-203ENST00000504173 COX7A2LO14548 114 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 LEPROTL1O95214 131 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 C14orf177Q52M58 125 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 LINC00242Q5T6M2 205 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 CFAP161Q6P656 301 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 Q8N814 137 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 IFI27L1Q96BM0 104 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 CST9LQ9H4G1 147 aa6.6□□□□□ -1.35
NUP54-203ENST00000504173 PRSS1P07477 247 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 FABP4P15090 132 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 MALP21145 153 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 SEC11AP67812 179 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 COA6Q5JTJ3 125 aaKnown RBP6.59□□□□□ -1.35
NUP54-203ENST00000504173 SPATA12Q7Z6I5 190 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 C5orf38Q86SI9 138 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 GEMIN7Q9H840 131 aaKnown RBP6.59□□□□□ -1.35
NUP54-203ENST00000504173 HSPB8Q9UJY1 196 aa6.59□□□□□ -1.35
NUP54-203ENST00000504173 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.58□□□□□ -1.36
NUP54-203ENST00000504173 IGHV3OR16-9A0A0B4J2B5 98 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 IGHV1-58A0A0C4DH39 117 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 A0A0J9YXV3 536 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 hDV102S1A0JD36 115 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 J3QL48 77 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 HERVK_113P63121 156 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 COX6A2Q02221 97 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 FAM19A3Q7Z5A8 133 aa6.58□□□□□ -1.36
NUP54-203ENST00000504173 APOMO95445 188 aa6.57□□□□□ -1.36
NUP54-203ENST00000504173 S100A6P06703 90 aa6.57□□□□□ -1.36
NUP54-203ENST00000504173 KRTAP10-2P60368 255 aa6.57□□□□□ -1.36
NUP54-203ENST00000504173 C15orf56Q8N910 161 aa6.57□□□□□ -1.36
NUP54-203ENST00000504173 IGLV5-52A0A0A0MRZ9 124 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 TRAV12-1A0A0B4J245 112 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 TINCRA0A1B0GVN0 87 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 H0Y8G0 127 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 FUSP35637 526 aaKnown RBP eCLIP6.56□□□□□ -1.36
NUP54-203ENST00000504173 HIGD2BQ4VC39 106 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 LINC00469Q8N7U9 141 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 NTN5Q8WTR8 489 aaPredicted RBP6.56□□□□□ -1.36
NUP54-203ENST00000504173 PACRGQ96M98 296 aaPredicted RBP6.56□□□□□ -1.36
NUP54-203ENST00000504173 CHAC1Q9BUX1 264 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 PGPEP1Q9NXJ5 209 aa6.56□□□□□ -1.36
NUP54-203ENST00000504173 CHTOPQ9Y3Y2 248 aaKnown RBP6.56□□□□□ -1.36
NUP54-203ENST00000504173 A0A087WZ39 114 aa6.55□□□□□ -1.36
NUP54-203ENST00000504173 GVQW2A0A096LPI5 108 aaPredicted RBP6.55□□□□□ -1.36
NUP54-203ENST00000504173 IGLC3P0DOY3 106 aa6.55□□□□□ -1.36
NUP54-203ENST00000504173 CDPF1Q6NVV7 123 aa6.55□□□□□ -1.36
NUP54-203ENST00000504173 MAP1LC3CQ9BXW4 147 aa6.55□□□□□ -1.36
NUP54-203ENST00000504173 CDKN2A-AS1Q9UH64 79 aa6.55□□□□□ -1.36
NUP54-203ENST00000504173 IGLV4-69A0A075B6H9 119 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 IGHV3-64A0A075B6Q5 118 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 F8VRH5 84 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 ZNF561-AS1K7EIQ3 104 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 SMCPP49901 116 aaPredicted RBP6.54□□□□□ -1.36
NUP54-203ENST00000504173 SPAG11BQ08648 103 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 Q5VSD8 79 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 LINC01561Q8N1V8 128 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 ORAOV1Q8WV07 137 aa6.54□□□□□ -1.36
NUP54-203ENST00000504173 IGLV5-45A0A087WSX0 123 aa6.53□□□□□ -1.36
NUP54-203ENST00000504173 C11orf86A6NJI1 115 aa6.53□□□□□ -1.36
NUP54-203ENST00000504173 H3BRM9 83 aa6.53□□□□□ -1.36
NUP54-203ENST00000504173 S100A2P29034 98 aa6.53□□□□□ -1.36
NUP54-203ENST00000504173 OR10D4PQ8NGN7 298 aa6.53□□□□□ -1.36
NUP54-203ENST00000504173 LINC00526Q96FQ7 95 aa6.53□□□□□ -1.36
NUP54-203ENST00000504173 MRPL35Q9NZE8 188 aaKnown RBP6.53□□□□□ -1.36
NUP54-203ENST00000504173 KRTAP9-6A0A140TA67 174 aa6.52□□□□□ -1.37
NUP54-203ENST00000504173 SPINK8P0C7L1 97 aa6.52□□□□□ -1.37
NUP54-203ENST00000504173 ZNF22P17026 224 aaPredicted RBP6.52□□□□□ -1.37
NUP54-203ENST00000504173 ODF1Q14990 250 aa6.52□□□□□ -1.37
NUP54-203ENST00000504173 TMEM170BQ5T4T1 132 aa6.52□□□□□ -1.37
NUP54-203ENST00000504173 HIST3H2BBQ8N257 126 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms