RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PRNTQ86SH4 94 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 Q86TA4 180 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 TSKUQ8WUA8 353 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 UBE2WQ96B02 151 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 TVP23CQ96ET8 276 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 PLAC8Q9NZF1 115 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 KLK12Q9UKR0 248 aa2.43□□□□□ -2.02
USP54-217ENST00000498213 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.42□□□□□ -2.02
USP54-217ENST00000498213 TGIF2-C20orf24A0A0A6YYL0 155 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 A0A0J9YXV3 536 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 LOC100131303A0A0U1RQF7 123 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 B4DEV8 164 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 LTAP01374 205 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 CRIP1P50238 77 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 ZNF80P51504 273 aaPredicted RBP2.42□□□□□ -2.02
USP54-217ENST00000498213 WFDC2Q14508 124 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 Q6ZQT7 251 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 ZNF664Q8N3J9 261 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 SPACA4Q8TDM5 124 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 ALKBH7Q9BT30 221 aaPredicted RBP2.42□□□□□ -2.02
USP54-217ENST00000498213 RNASE7Q9H1E1 156 aaKnown RBP2.42□□□□□ -2.02
USP54-217ENST00000498213 BIN3Q9NQY0 253 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 V9GYV3 84 aa2.42□□□□□ -2.02
USP54-217ENST00000498213 FCGBPQ9Y6R7 5405 aaPredicted RBP2.41□□□□□ -2.02
USP54-217ENST00000498213 IGHV1-24A0A0C4DH33 117 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 XKRY2A2RUG3 117 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 C19orf71A6NCJ1 209 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 TMEM262E9PQX1 116 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 F2Z2F3 143 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 F8WDY8 70 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 SNAI2O43623 268 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 NCR2O95944 276 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 ANGP03950 147 aaKnown RBP2.41□□□□□ -2.02
USP54-217ENST00000498213 S100A6P06703 90 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 ARMS2P0C7Q2 107 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 SMIM17P0DL12 118 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 ZNF25P17030 456 aaPredicted RBP2.41□□□□□ -2.02
USP54-217ENST00000498213 GNG4P50150 75 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 RPS20P60866 119 aaKnown RBP2.41□□□□□ -2.02
USP54-217ENST00000498213 UBE2G1P62253 170 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 CACNG7P62955 275 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 S100A12P80511 92 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 SMAGPQ0VAQ4 97 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 PRR4Q16378 134 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 ENHOQ6UWT2 76 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 BAGE2Q86Y30 109 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 KRTAP11-1Q8IUC1 163 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 LINC00167Q96N53 147 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 AP1S3Q96PC3 154 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 SMCO4Q9NRQ5 59 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 KIF25-AS1Q9Y6Z4 181 aa2.41□□□□□ -2.02
USP54-217ENST00000498213 FAM231BA6NCW3 169 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 LECT2O14960 151 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 MT-ND4LP03901 98 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 RAB5AP20339 215 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 RPS10P46783 165 aaKnown RBP2.4□□□□□ -2.03
USP54-217ENST00000498213 RBX1P62877 108 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 REG3AQ06141 175 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 LBHQ53QV2 105 aaPredicted RBP2.4□□□□□ -2.03
USP54-217ENST00000498213 KRTAP26-1Q6PEX3 210 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 FAM231DQ6ZW35 169 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 KRTAP5-5Q701N2 237 aaPredicted RBP2.4□□□□□ -2.03
USP54-217ENST00000498213 C15orf54Q8N8G6 183 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 GTSF1Q8WW33 167 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 OSTCQ9NRP0 149 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 TMEM242Q9NWH2 141 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 PSORS1C2Q9UIG4 136 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 USH2AO75445 5202 aa2.4□□□□□ -2.03
USP54-217ENST00000498213 TRBV24-1A0A075B6N3 115 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 GVQW2A0A096LPI5 108 aaPredicted RBP2.39□□□□□ -2.03
USP54-217ENST00000498213 IGHV3-73A0A0B4J1V6 119 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 SMIM27A0A1W2PRY6 76 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 H3BVH4 76 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 GATCO43716 136 aaKnown RBP2.39□□□□□ -2.03
USP54-217ENST00000498213 SH2D1AO60880 128 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 HLA-DQA1P01909 254 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 TRGC1P0CF51 173 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 PRR3P79522 188 aaKnown RBP2.39□□□□□ -2.03
USP54-217ENST00000498213 MPV17L2Q567V2 206 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 FAM74A4Q5TZK3 123 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 SPANXN1Q5VSR9 72 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 C14orf178Q8N769 122 aaPredicted RBP2.39□□□□□ -2.03
USP54-217ENST00000498213 DPH3Q96FX2 82 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 TMEM243Q9BU79 118 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 SAMD10Q9BYL1 202 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 RPP21Q9H633 154 aaKnown RBP2.39□□□□□ -2.03
USP54-217ENST00000498213 ANAPC11Q9NYG5 84 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 NEBP20929 6669 aa2.39□□□□□ -2.03
USP54-217ENST00000498213 IGLV1-50A0A075B6I6 118 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 TMSB15BA0A087X1C1 80 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 LOC105371267A0A1B0GV96 52 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 A0A1B0GXF2 115 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 FAM168BA1KXE4 195 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 A4D1N5 150 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 GRIFINA4D1Z8 144 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 M0QY20 66 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 M0R381 172 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 UBE2L6O14933 153 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 PPP1R2P9O14990 202 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 TCAPO15273 167 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms