RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LINC00528Q8N1L1 170 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 CST9LQ9H4G1 147 aa7.86□□□□□ -1.15
CUX1-210ENST00000497815 LEPROTL1O95214 131 aa7.85□□□□□ -1.15
CUX1-210ENST00000497815 PRSS1P07477 247 aa7.85□□□□□ -1.15
CUX1-210ENST00000497815 LINC00242Q5T6M2 205 aa7.85□□□□□ -1.15
CUX1-210ENST00000497815 C5orf38Q86SI9 138 aa7.85□□□□□ -1.15
CUX1-210ENST00000497815 IFI27L1Q96BM0 104 aa7.85□□□□□ -1.15
CUX1-210ENST00000497815 DNAH10Q8IVF4 4471 aa7.84□□□□□ -1.15
CUX1-210ENST00000497815 A0A0J9YXV3 536 aa7.84□□□□□ -1.15
CUX1-210ENST00000497815 COX7A2LO14548 114 aa7.84□□□□□ -1.15
CUX1-210ENST00000497815 FUSP35637 526 aaKnown RBP eCLIP7.84□□□□□ -1.155e-7■■■■□ 23.7
CUX1-210ENST00000497815 COX6A2Q02221 97 aa7.84□□□□□ -1.15
CUX1-210ENST00000497815 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.83□□□□□ -1.16
CUX1-210ENST00000497815 H0Y8G0 127 aa7.83□□□□□ -1.16
CUX1-210ENST00000497815 MALP21145 153 aa7.83□□□□□ -1.16
CUX1-210ENST00000497815 COA6Q5JTJ3 125 aaKnown RBP7.83□□□□□ -1.16
CUX1-210ENST00000497815 SPATA12Q7Z6I5 190 aa7.83□□□□□ -1.16
CUX1-210ENST00000497815 Q8N814 137 aa7.83□□□□□ -1.16
CUX1-210ENST00000497815 HSPB8Q9UJY1 196 aa7.83□□□□□ -1.16
CUX1-210ENST00000497815 IGHV3OR16-9A0A0B4J2B5 98 aa7.82□□□□□ -1.16
CUX1-210ENST00000497815 A0A1B0GVY2 172 aa7.82□□□□□ -1.16
CUX1-210ENST00000497815 KRTAP10-2P60368 255 aa7.82□□□□□ -1.16
CUX1-210ENST00000497815 HIGD2BQ4VC39 106 aa7.82□□□□□ -1.16
CUX1-210ENST00000497815 C15orf56Q8N910 161 aa7.82□□□□□ -1.16
CUX1-210ENST00000497815 GEMIN7Q9H840 131 aaKnown RBP7.82□□□□□ -1.16
CUX1-210ENST00000497815 DNAH17Q9UFH2 4485 aa7.81□□□□□ -1.16
CUX1-210ENST00000497815 hDV102S1A0JD36 115 aa7.81□□□□□ -1.16
CUX1-210ENST00000497815 C14orf177Q52M58 125 aa7.81□□□□□ -1.16
CUX1-210ENST00000497815 CFAP161Q6P656 301 aa7.81□□□□□ -1.16
CUX1-210ENST00000497815 IGHV1-58A0A0C4DH39 117 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 TINCRA0A1B0GVN0 87 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 S100A6P06703 90 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 HERVK_113P63121 156 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 SEC11AP67812 179 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 FAM19A3Q7Z5A8 133 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 LINC00469Q8N7U9 141 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 LINC00526Q96FQ7 95 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 CHAC1Q9BUX1 264 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 CDKN2A-AS1Q9UH64 79 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 CHTOPQ9Y3Y2 248 aaKnown RBP7.8□□□□□ -1.16
CUX1-210ENST00000497815 FRAS1Q86XX4 4008 aa7.8□□□□□ -1.16
CUX1-210ENST00000497815 IGLV4-69A0A075B6H9 119 aa7.79□□□□□ -1.16
CUX1-210ENST00000497815 ORAOV1Q8WV07 137 aa7.79□□□□□ -1.16
CUX1-210ENST00000497815 MAP1LC3CQ9BXW4 147 aa7.79□□□□□ -1.16
CUX1-210ENST00000497815 A0A087WZ39 114 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 IGLV5-52A0A0A0MRZ9 124 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 TRAV12-1A0A0B4J245 112 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 APOMO95445 188 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 IGLC3P0DOY3 106 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 PGPEP1Q9NXJ5 209 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 MRPL35Q9NZE8 188 aaKnown RBP7.78□□□□□ -1.16
CUX1-210ENST00000497815 FAT2Q9NYQ8 4349 aa7.78□□□□□ -1.16
CUX1-210ENST00000497815 IGHV3-64A0A075B6Q5 118 aa7.77□□□□□ -1.17
CUX1-210ENST00000497815 GVQW2A0A096LPI5 108 aaPredicted RBP7.77□□□□□ -1.17
CUX1-210ENST00000497815 C11orf86A6NJI1 115 aa7.77□□□□□ -1.17
CUX1-210ENST00000497815 ZNF561-AS1K7EIQ3 104 aa7.77□□□□□ -1.17
CUX1-210ENST00000497815 S100A2P29034 98 aa7.77□□□□□ -1.17
CUX1-210ENST00000497815 SNRPEP62304 92 aaKnown RBP7.77□□□□□ -1.17
CUX1-210ENST00000497815 SPAG11BQ08648 103 aa7.77□□□□□ -1.17
CUX1-210ENST00000497815 NTN5Q8WTR8 489 aaPredicted RBP7.77□□□□□ -1.17
CUX1-210ENST00000497815 PACRGQ96M98 296 aaPredicted RBP7.77□□□□□ -1.17
CUX1-210ENST00000497815 PMCHL2Q9BQD1 86 aa7.77□□□□□ -1.17
CUX1-210ENST00000497815 F8VRH5 84 aa7.76□□□□□ -1.17
CUX1-210ENST00000497815 SPINK8P0C7L1 97 aa7.76□□□□□ -1.17
CUX1-210ENST00000497815 KRTDAPP60985 99 aa7.76□□□□□ -1.17
CUX1-210ENST00000497815 ODF1Q14990 250 aa7.76□□□□□ -1.17
CUX1-210ENST00000497815 LINC01620Q4KN68 170 aa7.76□□□□□ -1.17
CUX1-210ENST00000497815 HIST3H2BBQ8N257 126 aa7.76□□□□□ -1.17
CUX1-210ENST00000497815 TMA7Q9Y2S6 64 aaKnown RBP7.76□□□□□ -1.17
CUX1-210ENST00000497815 IGLV5-45A0A087WSX0 123 aa7.75□□□□□ -1.17
CUX1-210ENST00000497815 C16orf90A8MZG2 172 aa7.75□□□□□ -1.17
CUX1-210ENST00000497815 H3BRM9 83 aa7.75□□□□□ -1.17
CUX1-210ENST00000497815 ZNF22P17026 224 aaPredicted RBP7.75□□□□□ -1.17
CUX1-210ENST00000497815 TMEM170BQ5T4T1 132 aa7.75□□□□□ -1.17
CUX1-210ENST00000497815 OR10D4PQ8NGN7 298 aa7.75□□□□□ -1.17
CUX1-210ENST00000497815 TOMM7Q9P0U1 55 aa7.75□□□□□ -1.17
CUX1-210ENST00000497815 SYS1-DBNDD2H3BUS1 97 aa7.74□□□□□ -1.17
CUX1-210ENST00000497815 SLPIP03973 132 aa7.74□□□□□ -1.17
CUX1-210ENST00000497815 C3orf79P0CE67 100 aa7.74□□□□□ -1.17
CUX1-210ENST00000497815 CDPF1Q6NVV7 123 aa7.74□□□□□ -1.17
CUX1-210ENST00000497815 LINC01561Q8N1V8 128 aa7.74□□□□□ -1.17
CUX1-210ENST00000497815 HIST1H2BLQ99880 126 aa7.74□□□□□ -1.17
CUX1-210ENST00000497815 SMIM1B2RUZ4 78 aa7.73□□□□□ -1.17
CUX1-210ENST00000497815 PRSS2P07478 247 aa7.73□□□□□ -1.17
CUX1-210ENST00000497815 CAMK2N2Q96S95 79 aa7.73□□□□□ -1.17
CUX1-210ENST00000497815 PKD1P98161 4303 aa7.72□□□□□ -1.17
CUX1-210ENST00000497815 EPPK1P58107 5090 aaKnown RBP7.72□□□□□ -1.17
CUX1-210ENST00000497815 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.72□□□□□ -1.17
CUX1-210ENST00000497815 C5orf52A6NGY3 159 aa7.72□□□□□ -1.17
CUX1-210ENST00000497815 DPM2O94777 84 aa7.72□□□□□ -1.17
CUX1-210ENST00000497815 GCSHP23434 173 aa7.72□□□□□ -1.17
CUX1-210ENST00000497815 CNBPP62633 177 aaKnown RBP7.72□□□□□ -1.17
CUX1-210ENST00000497815 SYCNQ0VAF6 134 aa7.72□□□□□ -1.17
CUX1-210ENST00000497815 PET117Q6UWS5 81 aa7.72□□□□□ -1.17
CUX1-210ENST00000497815 IGKCP01834 107 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 PLNP26678 52 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 KIAA0087Q14695 138 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 C6orf226Q5I0X4 101 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 C2orf82Q6UX34 121 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 Q6ZRU5 148 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms