RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 LINC00308Q8TCZ7 52 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 DCANP1Q8TF63 244 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 DSCAML1Q8TD84 2053 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 TRBV27A0A0K0K1C4 114 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 PRM2P04554 102 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 C10orf142B7Z368 130 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 TRBV6-5A0A0K0K1A5 114 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 IGLV2-11P01706 119 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 Q6JHZ5 121 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 IGKV2-28A0A075B6P5 120 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 IGKV2D-28P01615 120 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 C9orf85Q96MD7 179 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 IGLV4-69A0A075B6H9 119 aa9.63□□□□□ -0.87
PTPRF-215ENST00000496447 PYGO1Q9Y3Y4 419 aa9.62□□□□□ -0.87
PTPRF-215ENST00000496447 TSHBP01222 138 aa9.62□□□□□ -0.87
PTPRF-215ENST00000496447 MRGPRG-AS1Q2M3A8 158 aa9.62□□□□□ -0.87
PTPRF-215ENST00000496447 LOC107984640A0A0U1RRK4 108 aa9.61□□□□□ -0.87
PTPRF-215ENST00000496447 SLPIP03973 132 aa9.61□□□□□ -0.87
PTPRF-215ENST00000496447 ZNF706Q9Y5V0 76 aaPredicted RBP9.61□□□□□ -0.87
PTPRF-215ENST00000496447 LINC00959A0A1B0GUT2 108 aa9.61□□□□□ -0.87
PTPRF-215ENST00000496447 KIAA1549Q9HCM3 1950 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 NUPR2A6NF83 97 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 PPDPFQ9H3Y8 114 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 C6orf99Q4VX62 202 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 URB1-AS1Q96HZ7 61 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 C11orf21Q9P2W6 132 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 CASC2Q6XLA1 102 aa9.6□□□□□ -0.87
PTPRF-215ENST00000496447 RETNQ9HD89 108 aa9.59□□□□□ -0.87
PTPRF-215ENST00000496447 UBE2D3P61077 147 aa9.59□□□□□ -0.87
PTPRF-215ENST00000496447 UBE2D2P62837 147 aa9.59□□□□□ -0.87
PTPRF-215ENST00000496447 ODF3L2Q3SX64 289 aa9.59□□□□□ -0.87
PTPRF-215ENST00000496447 M0R378 163 aa9.58□□□□□ -0.88
PTPRF-215ENST00000496447 UBE2D4Q9Y2X8 147 aa9.58□□□□□ -0.88
PTPRF-215ENST00000496447 PIEZO2Q9H5I5 2752 aa9.58□□□□□ -0.88
PTPRF-215ENST00000496447 A8MZ25 164 aa9.58□□□□□ -0.88
PTPRF-215ENST00000496447 EDN2P20800 178 aa9.57□□□□□ -0.88
PTPRF-215ENST00000496447 LINC00474Q9P2X8 69 aa9.57□□□□□ -0.88
PTPRF-215ENST00000496447 C1orf158Q8N1D5 194 aa9.57□□□□□ -0.88
PTPRF-215ENST00000496447 NRACQ8N912 160 aa9.57□□□□□ -0.88
PTPRF-215ENST00000496447 IGLV1-51P01701 117 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 K7ERS5 55 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 CDIP1Q9H305 208 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 DHRS4-AS1Q9P1J3 65 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 A0A1W2PPR1 153 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 SPINK6Q6UWN8 80 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 PRR15LQ9BU68 103 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 SCXQ7RTU7 201 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 SNURFQ9Y675 71 aa9.56□□□□□ -0.88
PTPRF-215ENST00000496447 RPL37AP8A6NKH3 93 aa9.55□□□□□ -0.88
PTPRF-215ENST00000496447 C16orf95Q9H693 158 aa9.55□□□□□ -0.88
PTPRF-215ENST00000496447 CCKP06307 115 aa9.54□□□□□ -0.88
PTPRF-215ENST00000496447 PLAC8L1A1L4L8 177 aa9.54□□□□□ -0.88
PTPRF-215ENST00000496447 BRI3O95415 125 aa9.54□□□□□ -0.88
PTPRF-215ENST00000496447 TANC2Q9HCD6 1990 aa9.54□□□□□ -0.88
PTPRF-215ENST00000496447 PRO0628Q9UI54 55 aa9.54□□□□□ -0.88
PTPRF-215ENST00000496447 TRAV7A0A075B6U4 112 aa9.53□□□□□ -0.88
PTPRF-215ENST00000496447 POLR2KP53803 58 aaKnown RBP9.53□□□□□ -0.88
PTPRF-215ENST00000496447 LRP4O75096 1905 aa9.53□□□□□ -0.88
PTPRF-215ENST00000496447 WFDC10BQ8IUB3 73 aa9.53□□□□□ -0.88
PTPRF-215ENST00000496447 PLXNB1O43157 2135 aa9.53□□□□□ -0.88
PTPRF-215ENST00000496447 CRIP2P52943 208 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-215ENST00000496447 FAM19A3Q7Z5A8 133 aa9.52□□□□□ -0.89
PTPRF-215ENST00000496447 C3orf84H3BNL1 204 aa9.52□□□□□ -0.89
PTPRF-215ENST00000496447 Q6ZQY7 126 aa9.51□□□□□ -0.89
PTPRF-215ENST00000496447 IGLV9-49A0A0B4J1Y8 123 aa9.51□□□□□ -0.89
PTPRF-215ENST00000496447 COX17Q14061 63 aa9.51□□□□□ -0.89
PTPRF-215ENST00000496447 CDC42SE2Q9NRR3 84 aa9.51□□□□□ -0.89
PTPRF-215ENST00000496447 ARHGAP32A7KAX9 2087 aa9.5□□□□□ -0.89
PTPRF-215ENST00000496447 TRBV7-7A0A0K0K1E9 115 aa9.5□□□□□ -0.89
PTPRF-215ENST00000496447 Q8IZM0 81 aa9.5□□□□□ -0.89
PTPRF-215ENST00000496447 CYSRT1A8MQ03 144 aa9.5□□□□□ -0.89
PTPRF-215ENST00000496447 Q6ZTC4 211 aa9.5□□□□□ -0.89
PTPRF-215ENST00000496447 CNFNQ9BYD5 112 aa9.49□□□□□ -0.89
PTPRF-215ENST00000496447 DOPEY1Q5JWR5 2465 aa9.49□□□□□ -0.89
PTPRF-215ENST00000496447 ZNF73O43830 326 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-215ENST00000496447 CHCHD7Q9BUK0 85 aa9.48□□□□□ -0.89
PTPRF-215ENST00000496447 RPS28P62857 69 aaKnown RBP9.48□□□□□ -0.89
PTPRF-215ENST00000496447 GAS8-AS1O95177 125 aa9.48□□□□□ -0.89
PTPRF-215ENST00000496447 IGLV5-52A0A0A0MRZ9 124 aa9.47□□□□□ -0.89
PTPRF-215ENST00000496447 MUC7Q8TAX7 377 aa9.47□□□□□ -0.89
PTPRF-215ENST00000496447 A6NED7 52 aa9.46□□□□□ -0.89
PTPRF-215ENST00000496447 C2CD3Q4AC94 2353 aa9.46□□□□□ -0.9
PTPRF-215ENST00000496447 COL5A1P20908 1838 aaPredicted RBP9.46□□□□□ -0.9
PTPRF-215ENST00000496447 PTPRSQ13332 1948 aa9.46□□□□□ -0.9
PTPRF-215ENST00000496447 SMIM11BQ8TCY0 68 aa9.46□□□□□ -0.9
PTPRF-215ENST00000496447 ZNF580Q9UK33 172 aa9.45□□□□□ -0.9
PTPRF-215ENST00000496447 HCFC1P51610 2035 aa9.45□□□□□ -0.9
PTPRF-215ENST00000496447 RPL28P46779 137 aaKnown RBP9.45□□□□□ -0.9
PTPRF-215ENST00000496447 PMAIP1Q13794 54 aa9.45□□□□□ -0.9
PTPRF-215ENST00000496447 UNQ6190/PRO20217Q6UXQ8 127 aa9.45□□□□□ -0.9
PTPRF-215ENST00000496447 TLN1Q9Y490 2541 aaKnown RBP9.45□□□□□ -0.9
PTPRF-215ENST00000496447 MYO9AB2RTY4 2548 aa9.45□□□□□ -0.9
PTPRF-215ENST00000496447 EGFEM1PQ0D2K5 195 aa9.44□□□□□ -0.9
PTPRF-215ENST00000496447 FHL2Q14192 279 aa9.44□□□□□ -0.9
PTPRF-215ENST00000496447 WFDC13Q8IUB5 93 aa9.43□□□□□ -0.9
PTPRF-215ENST00000496447 LINC00242Q5T6M2 205 aa9.43□□□□□ -0.9
PTPRF-215ENST00000496447 C6orf223Q8N319 242 aa9.43□□□□□ -0.9
PTPRF-215ENST00000496447 A0A096LNJ9 63 aa9.43□□□□□ -0.9
PTPRF-215ENST00000496447 JMJD1CQ15652 2540 aa9.43□□□□□ -0.9
PTPRF-215ENST00000496447 CRYGAP11844 174 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms