RNA–Protein interactions for RNA: ENST00000493903.1

GTF3A-208, Transcript of general transcription factor IIIA, humanhuman

TSL 3

Gene GTF3A, Length 748 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-208ENST00000493903 LINC00052Q96N35 136 aa1.92□□□□□ -2.1
GTF3A-208ENST00000493903 NAA38Q9BRA0 125 aaKnown RBP1.92□□□□□ -2.1
GTF3A-208ENST00000493903 CYSTM1Q9H1C7 97 aa1.92□□□□□ -2.1
GTF3A-208ENST00000493903 DYNLRB1Q9NP97 96 aa1.92□□□□□ -2.1
GTF3A-208ENST00000493903 ORMDL1Q9P0S3 153 aa1.92□□□□□ -2.1
GTF3A-208ENST00000493903 MPC1Q9Y5U8 109 aa1.92□□□□□ -2.1
GTF3A-208ENST00000493903 TENM2Q9NT68 2774 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 STAB2Q8WWQ8 2551 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 FRAS1Q86XX4 4008 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 CLPSL1A2RUU4 121 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 TPST1O60507 370 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 MRPL33O75394 65 aaKnown RBP1.91□□□□□ -2.1
GTF3A-208ENST00000493903 COX7CP15954 63 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 FAM74A1Q5RGS3 127 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 CASC2Q6XLA1 102 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 FOXI2Q6ZQN5 318 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 CTAGE3PQ8IX95 158 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 ERG28Q9UKR5 140 aa1.91□□□□□ -2.1
GTF3A-208ENST00000493903 IFITM5A6NNB3 132 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 YPEL1O60688 119 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 HMGN2P05204 90 aaKnown RBP1.9□□□□□ -2.11
GTF3A-208ENST00000493903 LINC00694P0DN24 101 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 CKS2P33552 79 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 PCBD1P61457 104 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 SNRPD3P62318 126 aaKnown RBP1.9□□□□□ -2.11
GTF3A-208ENST00000493903 RPS25P62851 125 aaKnown RBP1.9□□□□□ -2.11
GTF3A-208ENST00000493903 DEFB112Q30KQ8 113 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 FAM19A2Q8N3H0 131 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 OTOSQ8NHW6 89 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 CIB3Q96Q77 187 aaPredicted RBP1.9□□□□□ -2.11
GTF3A-208ENST00000493903 LINC00470Q9BZP3 86 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 COMMD3Q9UBI1 195 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 TNFSF18Q9UNG2 199 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 DNAJC15Q9Y5T4 150 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 HECTD4Q9Y4D8 3996 aa1.9□□□□□ -2.11
GTF3A-208ENST00000493903 WNK2Q9Y3S1 2297 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 C3orf85A0A1B0GTC6 90 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 F8W1H4 67 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 K7EIL1 84 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 CD14P08571 375 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 CCL8P80075 99 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 MIR22HGQ0VDD5 57 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 SPRNQ5BIV9 151 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 C3orf62Q6ZUJ4 267 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 KRTAP5-2Q701N4 177 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 C10orf111Q8N326 155 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 ZNF563Q8TA94 476 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 SDF2Q99470 211 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 SLC35B3Q9H1N7 401 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 DNAH10Q8IVF4 4471 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 CSMD3Q7Z407 3707 aa1.89□□□□□ -2.11
GTF3A-208ENST00000493903 TRBV6-4A0A1B0GX49 114 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 K7ERU9 68 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 M0R2N4 97 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 IGHV3-33P01772 117 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 RBP4P02753 201 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 CD3DP04234 171 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 DNAJB13P59910 316 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 SELENOWP63302 87 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 RPL13AP3Q6NVV1 102 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 C10orf82Q8WW14 230 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 MRPL57Q9BQC6 102 aaKnown RBP1.88□□□□□ -2.11
GTF3A-208ENST00000493903 LPAR5Q9H1C0 372 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 SNURFQ9Y675 71 aa1.88□□□□□ -2.11
GTF3A-208ENST00000493903 DYNC1H1Q14204 4646 aaKnown RBP1.87□□□□□ -2.11
GTF3A-208ENST00000493903 LOC110117498A0A087WWA1 95 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 LCE6AA0A183 80 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 NPFFO15130 113 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 INE1O15225 51 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 NUPR1O60356 82 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 COPZ1P61923 177 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 RPL38P63173 70 aaKnown RBP1.87□□□□□ -2.11
GTF3A-208ENST00000493903 MPV17LQ2QL34 196 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 UNQ6190/PRO20217Q6UXQ8 127 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 IZUMO2Q6UXV1 221 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 ZCCHC23Q6ZST2 131 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 C15orf53Q8NAA6 179 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 CDC42SE1Q9NRR8 79 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 DNAH6Q9C0G6 4158 aa1.87□□□□□ -2.11
GTF3A-208ENST00000493903 TRBV20-1A0A075B6N2 111 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 IGHV1-24A0A0C4DH33 117 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 A6NN06 94 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 H3BRM9 83 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 KRTAP12-1P59990 96 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 SPCS2Q15005 226 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 ATOH7Q8N100 152 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 WFDC9Q8NEX5 89 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 SMIM7Q9BQ49 75 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 HERC1Q15751 4861 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 PKHD1P08F94 4074 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 UBR4Q5T4S7 5183 aa1.86□□□□□ -2.11
GTF3A-208ENST00000493903 H3BQF6 201 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 HMGN4O00479 90 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 EDF1O60869 148 aaKnown RBP1.85□□□□□ -2.11
GTF3A-208ENST00000493903 LINC00032P0C843 101 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 ARL11Q969Q4 196 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 TMEM191AQ9H0A3 160 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 SAR1AQ9NR31 198 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 FAT2Q9NYQ8 4349 aa1.85□□□□□ -2.11
GTF3A-208ENST00000493903 VPS13DQ5THJ4 4388 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms