RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 AMELXQ99217 191 aa10.51□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 VCX2Q9H322 139 aa10.51□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 IGHV3-64A0A075B6Q5 118 aa10.5□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 ZC2HC1BQ5TFG8 222 aa10.5□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 SCGB3A1Q96QR1 104 aa10.5□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 KRTAP17-1Q9BYP8 105 aa10.5□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 IGHV3OR16-9A0A0B4J2B5 98 aa10.49□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 ZNF561-AS1K7EIQ3 104 aa10.49□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 APOMO95445 188 aa10.49□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 UBE2D1P51668 147 aa10.49□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 LINC00242Q5T6M2 205 aa10.49□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 ERASQ7Z444 233 aa10.49□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 DNAH8Q96JB1 4490 aa10.48□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 SDIM1Q6ZPB5 146 aa10.48□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 LINC00526Q96FQ7 95 aa10.48□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 URB1-AS1Q96HZ7 61 aa10.48□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 LINC00614P0C842 121 aa10.47□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 RAB5BP61020 215 aa10.47□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 SCXQ7RTU7 201 aa10.47□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 SMR3BP02814 79 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 COX6A2Q02221 97 aa10.46□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 SPAG11BQ08648 103 aa10.46□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 OR10D4PQ8NGN7 298 aa10.46□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 CARD19Q96LW7 228 aa10.46□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 CHAC1Q9BUX1 264 aa10.46□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 IGLV4-69A0A075B6H9 119 aa10.45□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 FAM19A3Q7Z5A8 133 aa10.45□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 ORAOV1Q8WV07 137 aa10.45□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 A0A087WZ39 114 aa10.44□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 A0A096LNJ9 63 aa10.44□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 SYCNQ0VAF6 134 aa10.44□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 KRTAP4-5Q9BYR2 181 aa10.44□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 EPM2AB3EWF7 344 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 HBDP02042 147 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 TRGC2P03986 189 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 SEC11AP67812 179 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 CIRBP-AS1Q8TBR5 109 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 C2orf48Q96LS8 159 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 CAMK2N2Q96S95 79 aa10.43□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 COLCA2A8K830 154 aa10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 PANO1I0J062 215 aa10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 HERVK_113P63121 156 aa10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 PMCHL1Q16048 86 aa10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 LINC01561Q8N1V8 128 aa10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 PKIGQ9Y2B9 76 aa10.42□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 CIRBPQ14011 172 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 Q5VSD8 79 aa10.41□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 Q6ZRU5 148 aa10.41□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 CHCHD1Q96BP2 118 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 GEMIN7Q9H840 131 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 A0A0J9YXV3 536 aa10.4□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 FAM229AH3BQW9 127 aa10.4□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 CHTF8P0CG12 524 aa10.4□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 PMVKQ15126 192 aa10.4□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 PDZD11Q5EBL8 140 aa10.4□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 CST9LQ9H4G1 147 aa10.4□□□□□ -0.74
MSH5-SAPCD1-206ENST00000491552 F8WDY8 70 aa10.39□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 SCO1O75880 301 aa10.39□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 SPACA4Q8TDM5 124 aa10.39□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 TINCRA0A1B0GVN0 87 aa10.38□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 BAGE3Q86Y29 109 aa10.38□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 LINC00528Q8N1L1 170 aa10.38□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 CDKN2A-AS1Q9UH64 79 aa10.38□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 A0A096LNI7 61 aa10.37□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 IGKV2-24A0A0C4DH68 120 aa10.37□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 NDUFA1O15239 70 aa10.37□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 ATP5LO75964 103 aa10.37□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 DPH3Q96FX2 82 aa10.37□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 LOC107984640A0A0U1RRK4 108 aa10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 KIAA0087Q14695 138 aa10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 RNF151Q2KHN1 245 aa10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 MAJINQ3KP22 176 aa10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 LINC00469Q8N7U9 141 aa10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 PACRGQ96M98 296 aaPredicted RBP10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 MRPL35Q9NZE8 188 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 NDUFA6P56556 154 aa10.35□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 LINC00474Q9P2X8 69 aa10.35□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 IGLV5-45A0A087WSX0 123 aa10.34□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 A0A087WYN8 130 aa10.34□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 HSBP1O75506 76 aa10.34□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 PRSS2P07478 247 aa10.34□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 UNQ6190/PRO20217Q6UXQ8 127 aa10.34□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 TOMM7Q9P0U1 55 aa10.34□□□□□ -0.75
MSH5-SAPCD1-206ENST00000491552 PLA2G1BP04054 148 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 IGLC3P0DOY3 106 aa10.33□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 C10orf25Q5T742 122 aa10.33□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 Q8IZM0 81 aa10.33□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 PLAC8Q9NZF1 115 aa10.33□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 FAT1Q14517 4588 aa10.33□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 SMIM1B2RUZ4 78 aa10.32□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 SERF1AO75920 110 aa10.32□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 PTTG1IPP53801 180 aa10.32□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 RPL18AQ02543 176 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 GAGE2BQ13066 116 aa10.32□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 C6orf48Q9UBA6 75 aa10.32□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 C6orf226Q5I0X4 101 aa10.31□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 C2orf82Q6UX34 121 aa10.31□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 FAM19A2Q8N3H0 131 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms