RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SCN2AQ99250 2005 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 IGLV4-60A0A075B6I1 120 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV1D-43A0A0B4J1Z2 117 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV10-2A0A0K0K1G8 114 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LOC389332A0A1B0GUA5 103 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 TMEM14DPA8MWL7 114 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 H7C2G1 150 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 TMEM256-PLSCR3K7ERE1 68 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 M0R378 163 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF73O43830 326 aaPredicted RBP1.34□□□□□ -2.19
HMGB1-208ENST00000490788 IGLV2-8P01709 118 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 BGLAPP02818 100 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 CCKP06307 115 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ACYP1P07311 99 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ARL14EPLP0DKL9 152 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 CXCL8P10145 99 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 DEFA4P12838 97 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 RPS27P42677 84 aaKnown RBP1.34□□□□□ -2.19
HMGB1-208ENST00000490788 UBE2D1P51668 147 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 NCBP2P52298 156 aaKnown RBP eCLIP1.34□□□□□ -2.19
HMGB1-208ENST00000490788 FXYD7P58549 80 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LINC00315P59091 139 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 HBBP68871 147 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LAGE3Q14657 143 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 RHOHQ15669 191 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ATXN8Q156A1 80 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 KISS1Q15726 138 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 SPANXN5Q5MJ07 72 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LINC01590Q5TEZ4 76 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 FAM222AQ5U5X8 452 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 FAM104BQ5XKR9 115 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LYPD5Q6UWN5 251 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 SOSTDC1Q6X4U4 206 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 KTN1-AS1Q86SY8 53 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 NDUFA11Q86Y39 141 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LYPD6Q86Y78 171 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 Q8N8P6 123 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LINC01600Q96MT4 127 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 METTL26Q96S19 204 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF355PQ9NSJ1 428 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF492Q9P255 531 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 TAC3Q9UHF0 121 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LINC00588Q9Y4M8 146 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 SLC25A15Q9Y619 301 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 LHFPL6Q9Y693 200 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ANAPC1Q9H1A4 1944 aa1.34□□□□□ -2.2
HMGB1-208ENST00000490788 HECTD4Q9Y4D8 3996 aa1.34□□□□□ -2.2
HMGB1-208ENST00000490788 FSIP2Q5CZC0 6907 aa1.34□□□□□ -2.2
HMGB1-208ENST00000490788 IGLV4-69A0A075B6H9 119 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 A0A096LNJ9 63 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV3D-7A0A0C4DH55 119 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 TRBV27A0A0K0K1C4 114 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 LYRM9A8MSI8 78 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 HIGD1CA8MV81 97 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 UBE2L6O14933 153 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 NDUFB3O43676 98 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 NDUFS5O43920 106 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 IGHG2P01859 326 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 HBDP02042 147 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 IFI6P09912 130 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 XCL1P47992 114 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 ZNF80P51504 273 aaPredicted RBP1.33□□□□□ -2.2
HMGB1-208ENST00000490788 EDDM3BP56851 147 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 ADIGQ0VDE8 80 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 SDIM1Q6ZPB5 146 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 ZNF818PQ6ZRF7 136 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 PRNTQ86SH4 94 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 C20orf197Q8N268 126 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 Q8N2B8 174 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 SLC25A29Q8N8R3 303 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM75Q8N9X5 138 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 CCL17Q92583 94 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 TIMM17AQ99595 171 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 NPCDR1Q9BY65 106 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 BPESC1Q9GZL8 116 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 DEFB127Q9H1M4 99 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 XCL2Q9UBD3 114 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 PRO1854Q9UHT4 67 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 PLCE1Q9P212 2302 aa1.33□□□□□ -2.2
HMGB1-208ENST00000490788 CSMD3Q7Z407 3707 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 FRAS1Q86XX4 4008 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 A0A087WVE0 104 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV1-45A0A0A0MS14 117 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 A0A0G2JRQ6 117 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM30CPA0ZSE6 113 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 A8MUN3 132 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 IBA57-AS1B1ANH7 110 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 E7EUB6 86 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 H7BZZ5 65 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 M0R381 172 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 LST1O00453 97 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 NDUFA3O95167 84 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 HMGN2P05204 90 aaKnown RBP1.32□□□□□ -2.2
HMGB1-208ENST00000490788 FUSP35637 526 aaKnown RBP eCLIP1.32□□□□□ -2.2
HMGB1-208ENST00000490788 FGF12P61328 243 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 BLCAPP62952 87 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 FBXL19-AS1Q494R0 122 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 FAM229BQ4G0N7 80 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 Q6JHZ5 121 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 PP632Q6XCG6 107 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms