RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 GVQW2A0A096LPI5 108 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-210ENST00000489961 IGHV3OR16-9A0A0B4J2B5 98 aa7.1□□□□□ -1.27
VPS13D-210ENST00000489961 SERF1AO75920 110 aa7.1□□□□□ -1.27
VPS13D-210ENST00000489961 PMVKQ15126 192 aa7.1□□□□□ -1.27
VPS13D-210ENST00000489961 HIGD2BQ4VC39 106 aa7.1□□□□□ -1.27
VPS13D-210ENST00000489961 FAM19A3Q7Z5A8 133 aa7.1□□□□□ -1.27
VPS13D-210ENST00000489961 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-210ENST00000489961 ZNF561-AS1K7EIQ3 104 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BKO60814 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BJP06899 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BOP23527 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BBP33778 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 NDUFA6P56556 154 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BDP58876 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BCP62807 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HERVK_113P63121 156 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 COX6A2Q02221 97 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST2H2BEQ16778 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-210ENST00000489961 FAM19A2Q8N3H0 131 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BHQ93079 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BNQ99877 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 HIST1H2BMQ99879 126 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 CST9LQ9H4G1 147 aa7.09□□□□□ -1.27
VPS13D-210ENST00000489961 GEMIN7Q9H840 131 aaKnown RBP7.09□□□□□ -1.27
VPS13D-210ENST00000489961 A0A087WZ39 114 aa7.08□□□□□ -1.28
VPS13D-210ENST00000489961 A0A0J9YXV3 536 aa7.08□□□□□ -1.28
VPS13D-210ENST00000489961 CNBPP62633 177 aaKnown RBP7.08□□□□□ -1.28
VPS13D-210ENST00000489961 IGHV3-64A0A075B6Q5 118 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 TINCRA0A1B0GVN0 87 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 LINC00310P59036 64 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 KRTAP10-1P60331 282 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 LINC01561Q8N1V8 128 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 OR10D4PQ8NGN7 298 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 IFI27L1Q96BM0 104 aa7.07□□□□□ -1.28
VPS13D-210ENST00000489961 NUPR1O60356 82 aa7.06□□□□□ -1.28
VPS13D-210ENST00000489961 LEPROTL1O95214 131 aa7.06□□□□□ -1.28
VPS13D-210ENST00000489961 SPAG11BQ08648 103 aa7.06□□□□□ -1.28
VPS13D-210ENST00000489961 C9orf163Q8N9P6 203 aa7.06□□□□□ -1.28
VPS13D-210ENST00000489961 ORAOV1Q8WV07 137 aa7.06□□□□□ -1.28
VPS13D-210ENST00000489961 PACRGQ96M98 296 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-210ENST00000489961 HSPB8Q9UJY1 196 aa7.06□□□□□ -1.28
VPS13D-210ENST00000489961 EPPK1P58107 5090 aaKnown RBP7.06□□□□□ -1.28
VPS13D-210ENST00000489961 DNAH11Q96DT5 4516 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 IGLV4-69A0A075B6H9 119 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 SLPIP03973 132 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 LINC01620Q4KN68 170 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 LINC00469Q8N7U9 141 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 LINC00526Q96FQ7 95 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 C2orf48Q96LS8 159 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 CDKN2A-AS1Q9UH64 79 aa7.05□□□□□ -1.28
VPS13D-210ENST00000489961 IGLV5-45A0A087WSX0 123 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 TRAV12-1A0A0B4J245 112 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 F8WDY8 70 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 IGLC3P0DOY3 106 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 FABP4P15090 132 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 SYCNQ0VAF6 134 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 CARD19Q96LW7 228 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 CAMK2N2Q96S95 79 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 CHAC1Q9BUX1 264 aa7.04□□□□□ -1.28
VPS13D-210ENST00000489961 CHTOPQ9Y3Y2 248 aaKnown RBP7.04□□□□□ -1.28
VPS13D-210ENST00000489961 H3BRM9 83 aa7.03□□□□□ -1.28
VPS13D-210ENST00000489961 CDK2AP2O75956 126 aa7.03□□□□□ -1.28
VPS13D-210ENST00000489961 PRSS2P07478 247 aa7.03□□□□□ -1.28
VPS13D-210ENST00000489961 PKIGQ9Y2B9 76 aa7.03□□□□□ -1.28
VPS13D-210ENST00000489961 PKHD1P08F94 4074 aa7.02□□□□□ -1.29
VPS13D-210ENST00000489961 NDUFA1O15239 70 aa7.02□□□□□ -1.29
VPS13D-210ENST00000489961 COA6Q5JTJ3 125 aaKnown RBP7.02□□□□□ -1.29
VPS13D-210ENST00000489961 TOMM7Q9P0U1 55 aa7.02□□□□□ -1.29
VPS13D-210ENST00000489961 F8VRH5 84 aa7.01□□□□□ -1.29
VPS13D-210ENST00000489961 H0Y8G0 127 aa7.01□□□□□ -1.29
VPS13D-210ENST00000489961 SDIM1Q6ZPB5 146 aa7.01□□□□□ -1.29
VPS13D-210ENST00000489961 Q6ZRU5 148 aa7.01□□□□□ -1.29
VPS13D-210ENST00000489961 Q8IZM0 81 aa7.01□□□□□ -1.29
VPS13D-210ENST00000489961 C11orf86A6NJI1 115 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 SMIM1B2RUZ4 78 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 SPINK8P0C7L1 97 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 ZNF22P17026 224 aaPredicted RBP7□□□□□ -1.29
VPS13D-210ENST00000489961 CKS1BP61024 79 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 KIAA0087Q14695 138 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 C6orf226Q5I0X4 101 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 TMEM170BQ5T4T1 132 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 Q6ZSA8 131 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 MAP1LC3CQ9BXW4 147 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 MRPL35Q9NZE8 188 aaKnown RBP7□□□□□ -1.29
VPS13D-210ENST00000489961 FAM30AQ9NZY2 134 aa7□□□□□ -1.29
VPS13D-210ENST00000489961 ODF1Q14990 250 aa6.99□□□□□ -1.29
VPS13D-210ENST00000489961 RNF151Q2KHN1 245 aa6.99□□□□□ -1.29
VPS13D-210ENST00000489961 DYNC1H1Q14204 4646 aaKnown RBP6.98□□□□□ -1.29
VPS13D-210ENST00000489961 LOC107984640A0A0U1RRK4 108 aa6.98□□□□□ -1.29
VPS13D-210ENST00000489961 CXCL5P42830 114 aa6.98□□□□□ -1.29
VPS13D-210ENST00000489961 XGP55808 180 aa6.98□□□□□ -1.29
VPS13D-210ENST00000489961 UNQ6190/PRO20217Q6UXQ8 127 aa6.98□□□□□ -1.29
VPS13D-210ENST00000489961 COX7B2Q8TF08 81 aa6.98□□□□□ -1.29
VPS13D-210ENST00000489961 TRBV30A0A0K0K1B3 111 aa6.97□□□□□ -1.29
VPS13D-210ENST00000489961 S100A6P06703 90 aa6.97□□□□□ -1.29
VPS13D-210ENST00000489961 PLNP26678 52 aa6.97□□□□□ -1.29
VPS13D-210ENST00000489961 C2orf82Q6UX34 121 aa6.97□□□□□ -1.29
VPS13D-210ENST00000489961 DPH3Q96FX2 82 aa6.97□□□□□ -1.29
VPS13D-210ENST00000489961 BIRC6Q9NR09 4857 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms