RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 SYNE1Q8NF91 8797 aaKnown RBP0.48□□□□□ -2.33
XRN1-213ENST00000489241 A0A0G2JND7 137 aa0.48□□□□□ -2.33
XRN1-213ENST00000489241 S100A8P05109 93 aa0.48□□□□□ -2.33
XRN1-213ENST00000489241 DPY30Q9C005 99 aa0.48□□□□□ -2.33
XRN1-213ENST00000489241 EHBP1L1Q8N3D4 1523 aa0.48□□□□□ -2.33
XRN1-213ENST00000489241 SCN7AQ01118 1682 aa0.47□□□□□ -2.33
XRN1-213ENST00000489241 C10orf142B7Z368 130 aa0.47□□□□□ -2.33
XRN1-213ENST00000489241 SAA2P0DJI9 122 aaPredicted RBP0.47□□□□□ -2.33
XRN1-213ENST00000489241 SPRR4Q96PI1 79 aa0.47□□□□□ -2.33
XRN1-213ENST00000489241 VAMP8Q9BV40 100 aa0.47□□□□□ -2.33
XRN1-213ENST00000489241 CACFD1Q9UGQ2 172 aa0.47□□□□□ -2.33
XRN1-213ENST00000489241 ZFYVE26Q68DK2 2539 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 NAV2Q8IVL1 2488 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 FXYD6-FXYD2A0A087WZ82 144 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 PHGR1C9JFL3 82 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 NDUFC1O43677 76 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 SPINK1P00995 79 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 PKIAP61925 76 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 Q5BKY6 102 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 COL5A1-AS1Q5SY13 56 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 C10orf113Q5VZT2 155 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 PRO1933Q9H354 126 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 IGF2RP11717 2491 aa0.46□□□□□ -2.34
XRN1-213ENST00000489241 AKAP12Q02952 1782 aa0.45□□□□□ -2.34
XRN1-213ENST00000489241 ATOX1O00244 68 aa0.45□□□□□ -2.34
XRN1-213ENST00000489241 CFDP00746 253 aaPredicted RBP0.45□□□□□ -2.34
XRN1-213ENST00000489241 FAUP35544 74 aaKnown RBP0.45□□□□□ -2.34
XRN1-213ENST00000489241 ASIPP42127 132 aa0.45□□□□□ -2.34
XRN1-213ENST00000489241 TP53AIP1Q9HCN2 124 aa0.45□□□□□ -2.34
XRN1-213ENST00000489241 GOLGA4Q13439 2230 aaKnown RBP0.45□□□□□ -2.34
XRN1-213ENST00000489241 CELSR2Q9HCU4 2923 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 ARHGEF12Q9NZN5 1544 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 DOPEY2Q9Y3R5 2298 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 POLA1P09884 1462 aaPredicted RBP0.44□□□□□ -2.34
XRN1-213ENST00000489241 MRC2Q9UBG0 1479 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 MUC5ACP98088 5654 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 TRBV6-1A0A0K0K1D8 114 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 C7orf77A4D0Y5 90 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 PMCHL1Q16048 86 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 PIGYQ3MUY2 71 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 Q8IZM0 81 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 PTPRZ1P23471 2315 aaPredicted RBP0.44□□□□□ -2.34
XRN1-213ENST00000489241 NSD3Q9BZ95 1437 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 DIP2CQ9Y2E4 1556 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 NUP188Q5SRE5 1749 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 ANKRD36BQ8N2N9 1353 aa0.44□□□□□ -2.34
XRN1-213ENST00000489241 ADGRL2O95490 1459 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 ABCC10Q5T3U5 1492 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 FYCO1Q9BQS8 1478 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 MLH3Q9UHC1 1453 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 LAMC1P11047 1609 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 UQCRHP07919 91 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 SERP2Q8N6R1 65 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 LINC01600Q96MT4 127 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 TRGV9Q99603 122 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 USF3Q68DE3 2245 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 COL4A6Q14031 1691 aa0.43□□□□□ -2.34
XRN1-213ENST00000489241 SPTBN2O15020 2390 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 GAPVD1Q14C86 1478 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 TEX14Q8IWB6 1497 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 VPS8Q8N3P4 1428 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 A0A087WVE0 104 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 PSMG4Q5JS54 123 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 LCN9Q8WX39 176 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 SNHG12Q9BXW3 62 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 C2CD3Q4AC94 2353 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 CCNB3Q8WWL7 1395 aa0.42□□□□□ -2.34
XRN1-213ENST00000489241 MARF1Q9Y4F3 1742 aaKnown RBP0.41□□□□□ -2.34
XRN1-213ENST00000489241 FAT4Q6V0I7 4981 aa0.41□□□□□ -2.34
XRN1-213ENST00000489241 TRBV25-1A0A075B6N4 114 aa0.41□□□□□ -2.34
XRN1-213ENST00000489241 PRDM15P57071 1507 aaPredicted RBP0.41□□□□□ -2.34
XRN1-213ENST00000489241 BIVM-ERCC5R4GMW8 1640 aa0.41□□□□□ -2.34
XRN1-213ENST00000489241 DNAJC13O75165 2243 aa0.41□□□□□ -2.34
XRN1-213ENST00000489241 ANKRD36A6QL64 1941 aa0.4□□□□□ -2.34
XRN1-213ENST00000489241 PAPPAQ13219 1627 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 UQCRHLA0A096LP55 91 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 H7BZZ5 65 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 I3L2K1 104 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 Q9H521 79 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 LINC00846Q9NV44 126 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 ANKRD26Q9UPS8 1709 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 C1orf167Q5SNV9 1468 aa0.4□□□□□ -2.35
XRN1-213ENST00000489241 ZNF292O60281 2723 aa0.39□□□□□ -2.35
XRN1-213ENST00000489241 KNDC1Q76NI1 1749 aa0.39□□□□□ -2.35
XRN1-213ENST00000489241 MYH4Q9Y623 1939 aa0.39□□□□□ -2.35
XRN1-213ENST00000489241 WFDC2Q14508 124 aa0.39□□□□□ -2.35
XRN1-213ENST00000489241 DEFB107AQ8IZN7 70 aa0.39□□□□□ -2.35
XRN1-213ENST00000489241 MAGI1Q96QZ7 1491 aaPredicted RBP0.39□□□□□ -2.35
XRN1-213ENST00000489241 CHD9Q3L8U1 2897 aa0.39□□□□□ -2.35
XRN1-213ENST00000489241 OTOGQ6ZRI0 2925 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 PLEKHH2Q8IVE3 1493 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 TRBV7-4A0A0J9YYF1 115 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 H3BQF6 201 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 SYS1-DBNDD2H3BUS1 97 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 GNGT1P63211 74 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 U3KQA8 63 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 NHSL1Q5SYE7 1610 aa0.38□□□□□ -2.35
XRN1-213ENST00000489241 PTPRQQ9UMZ3 2332 aa0.37□□□□□ -2.35
XRN1-213ENST00000489241 NLRP1Q9C000 1473 aa0.37□□□□□ -2.35
XRN1-213ENST00000489241 LINC00959A0A1B0GUT2 108 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms