RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 A0A1B0GUT8 65 aa9.01□□□□□ -0.97
MCF2L-228ENST00000487354 HIGD1CA8MV81 97 aa9.01□□□□□ -0.97
MCF2L-228ENST00000487354 ZNF861PO60384 105 aa9.01□□□□□ -0.97
MCF2L-228ENST00000487354 RPL39P62891 51 aaKnown RBP9.01□□□□□ -0.97
MCF2L-228ENST00000487354 TMEM241Q24JQ0 296 aa9.01□□□□□ -0.97
MCF2L-228ENST00000487354 RGS21Q2M5E4 152 aa9□□□□□ -0.97
MCF2L-228ENST00000487354 TAGLN2P37802 199 aaKnown RBP8.99□□□□□ -0.97
MCF2L-228ENST00000487354 SMAGPQ0VAQ4 97 aa8.99□□□□□ -0.97
MCF2L-228ENST00000487354 KIR2DL4Q99706 377 aa8.98□□□□□ -0.97
MCF2L-228ENST00000487354 C2orf82Q6UX34 121 aa8.97□□□□□ -0.97
MCF2L-228ENST00000487354 BORCS7Q96B45 105 aa8.97□□□□□ -0.97
MCF2L-228ENST00000487354 NDUFC2-KCTD14E9PQ53 114 aa8.96□□□□□ -0.98
MCF2L-228ENST00000487354 TMEM250H0YL14 139 aa8.96□□□□□ -0.98
MCF2L-228ENST00000487354 MRPS36P82909 103 aaKnown RBP8.96□□□□□ -0.98
MCF2L-228ENST00000487354 RETNLBQ9BQ08 111 aa8.96□□□□□ -0.98
MCF2L-228ENST00000487354 TRBV30A0A0K0K1B3 111 aa8.95□□□□□ -0.98
MCF2L-228ENST00000487354 MRPL51Q4U2R6 128 aaKnown RBP8.95□□□□□ -0.98
MCF2L-228ENST00000487354 LINC01551Q86U37 167 aa8.95□□□□□ -0.98
MCF2L-228ENST00000487354 PPP1R2P9O14990 202 aa8.94□□□□□ -0.98
MCF2L-228ENST00000487354 PPP1R17O96001 155 aa8.94□□□□□ -0.98
MCF2L-228ENST00000487354 RPL32P62910 135 aaKnown RBP8.94□□□□□ -0.98
MCF2L-228ENST00000487354 KRTAP13-2Q52LG2 175 aa8.94□□□□□ -0.98
MCF2L-228ENST00000487354 TMEM18Q96B42 140 aa8.94□□□□□ -0.98
MCF2L-228ENST00000487354 SPANXA1Q9NS26 97 aa8.94□□□□□ -0.98
MCF2L-228ENST00000487354 TRBV24-1A0A075B6N3 115 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 IFITM10A6NMD0 228 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 NUPR1O60356 82 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 HBBP68871 147 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 CTDSP1Q9GZU7 261 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 BATF3Q9NR55 127 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 V9GYV3 84 aa8.93□□□□□ -0.98
MCF2L-228ENST00000487354 TPRXLQ17RH7 258 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 LINC00242Q5T6M2 205 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 FAM104BQ5XKR9 115 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 TYMSOSQ8TAI1 123 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 C20orf78Q9BR46 151 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 OSTCQ9NRP0 149 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 C22orf24Q9Y442 160 aa8.92□□□□□ -0.98
MCF2L-228ENST00000487354 RIGQ13278 110 aa8.91□□□□□ -0.98
MCF2L-228ENST00000487354 SMIM2Q9BVW6 85 aa8.91□□□□□ -0.98
MCF2L-228ENST00000487354 ANAPC11Q9NYG5 84 aa8.91□□□□□ -0.98
MCF2L-228ENST00000487354 TGIF2-C20orf24A0A0A6YYL0 155 aa8.9□□□□□ -0.98
MCF2L-228ENST00000487354 CRYGAP11844 174 aa8.9□□□□□ -0.98
MCF2L-228ENST00000487354 TNFRSF6BO95407 300 aa8.89□□□□□ -0.99
MCF2L-228ENST00000487354 CEBPGP53567 150 aa8.89□□□□□ -0.99
MCF2L-228ENST00000487354 LCE2DQ5TA82 110 aaPredicted RBP8.89□□□□□ -0.99
MCF2L-228ENST00000487354 SLC51BQ86UW2 128 aa8.89□□□□□ -0.99
MCF2L-228ENST00000487354 LINC00469Q8N7U9 141 aa8.89□□□□□ -0.99
MCF2L-228ENST00000487354 IGLV4-3A0A075B6K6 122 aa8.88□□□□□ -0.99
MCF2L-228ENST00000487354 TCAPO15273 167 aa8.88□□□□□ -0.99
MCF2L-228ENST00000487354 SMIM7Q9BQ49 75 aa8.88□□□□□ -0.99
MCF2L-228ENST00000487354 FSIP2Q5CZC0 6907 aa8.87□□□□□ -0.99
MCF2L-228ENST00000487354 LINC00862A6NCI5 91 aa8.87□□□□□ -0.99
MCF2L-228ENST00000487354 BCE1O60756 84 aa8.87□□□□□ -0.99
MCF2L-228ENST00000487354 NPYP01303 97 aa8.87□□□□□ -0.99
MCF2L-228ENST00000487354 KRTAP13-1Q8IUC0 172 aa8.87□□□□□ -0.99
MCF2L-228ENST00000487354 PACRGQ96M98 296 aaPredicted RBP8.87□□□□□ -0.99
MCF2L-228ENST00000487354 XAGE1AQ9HD64 81 aa8.87□□□□□ -0.99
MCF2L-228ENST00000487354 ZNF727A8MUV8 499 aa8.86□□□□□ -0.99
MCF2L-228ENST00000487354 RPL28P46779 137 aaKnown RBP8.86□□□□□ -0.99
MCF2L-228ENST00000487354 CDIP1Q9H305 208 aa8.86□□□□□ -0.99
MCF2L-228ENST00000487354 D6R8Y8 96 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 CKS2P33552 79 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 LINC00173Q6ZV60 143 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 LINC01561Q8N1V8 128 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 TP73-AS1Q9UF72 201 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 NAT8BQ9UHF3 227 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 PYGO1Q9Y3Y4 419 aa8.85□□□□□ -0.99
MCF2L-228ENST00000487354 FAM74A3Q4VXF1 159 aa8.84□□□□□ -0.99
MCF2L-228ENST00000487354 MRPL55Q7Z7F7 128 aaKnown RBP8.84□□□□□ -0.99
MCF2L-228ENST00000487354 LINC00304Q8N9R0 145 aa8.84□□□□□ -0.99
MCF2L-228ENST00000487354 CRCT1Q9UGL9 99 aa8.84□□□□□ -0.99
MCF2L-228ENST00000487354 IGLV7-46A0A075B6I9 117 aa8.83□□□□□ -1
MCF2L-228ENST00000487354 LBHQ53QV2 105 aaPredicted RBP8.83□□□□□ -1
MCF2L-228ENST00000487354 ZC2HC1BQ5TFG8 222 aa8.83□□□□□ -1
MCF2L-228ENST00000487354 SMIM27A0A1W2PRY6 76 aa8.82□□□□□ -1
MCF2L-228ENST00000487354 SRP19P09132 144 aaKnown RBP8.82□□□□□ -1
MCF2L-228ENST00000487354 IFI27P40305 119 aaPredicted RBP8.82□□□□□ -1
MCF2L-228ENST00000487354 TCTE3Q8IZS6 198 aa8.82□□□□□ -1
MCF2L-228ENST00000487354 FAM229BQ4G0N7 80 aa8.81□□□□□ -1
MCF2L-228ENST00000487354 ALKAL2Q6UX46 152 aa8.81□□□□□ -1
MCF2L-228ENST00000487354 TMEM141Q96I45 108 aa8.81□□□□□ -1
MCF2L-228ENST00000487354 LINC00167Q96N53 147 aa8.81□□□□□ -1
MCF2L-228ENST00000487354 KRTAP4-1Q9BYQ7 146 aa8.81□□□□□ -1
MCF2L-228ENST00000487354 EIF5A2Q9GZV4 153 aaKnown RBP8.81□□□□□ -1
MCF2L-228ENST00000487354 A0A1B0GXF2 115 aa8.8□□□□□ -1
MCF2L-228ENST00000487354 RPL37AP8A6NKH3 93 aa8.8□□□□□ -1
MCF2L-228ENST00000487354 RPL23P62829 140 aaKnown RBP8.8□□□□□ -1
MCF2L-228ENST00000487354 BLOC1S1P78537 153 aa8.8□□□□□ -1
MCF2L-228ENST00000487354 Q8IZM0 81 aa8.8□□□□□ -1
MCF2L-228ENST00000487354 AMELXQ99217 191 aa8.79□□□□□ -1
MCF2L-228ENST00000487354 TOMM7Q9P0U1 55 aa8.79□□□□□ -1
MCF2L-228ENST00000487354 A0A1B0GW15 77 aa8.78□□□□□ -1
MCF2L-228ENST00000487354 Q6ZN92 141 aa8.78□□□□□ -1
MCF2L-228ENST00000487354 TEX43Q6ZNM6 134 aa8.78□□□□□ -1
MCF2L-228ENST00000487354 FAM19A3Q7Z5A8 133 aa8.78□□□□□ -1
MCF2L-228ENST00000487354 CKS1BP61024 79 aa8.77□□□□□ -1.01
MCF2L-228ENST00000487354 MRPL54Q6P161 138 aaKnown RBP8.77□□□□□ -1.01
MCF2L-228ENST00000487354 PPDPFQ9H3Y8 114 aa8.77□□□□□ -1.01
MCF2L-228ENST00000487354 PRSS2P07478 247 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms