RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CDC42SE2Q9NRR3 84 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 COX8CQ7Z4L0 72 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 Q6ZQY7 126 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 WFDC13Q8IUB5 93 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 WFDC10AQ9H1F0 79 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 NOTCH2Q04721 2471 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 PRR4Q16378 134 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 MRGPRG-AS1Q2M3A8 158 aa11.99□□□□□ -0.49
COL7A1-210ENST00000487017 CSPG4Q6UVK1 2322 aa11.98□□□□□ -0.49
COL7A1-210ENST00000487017 SNURFQ9Y675 71 aa11.98□□□□□ -0.49
COL7A1-210ENST00000487017 CDSNQ15517 529 aa11.98□□□□□ -0.49
COL7A1-210ENST00000487017 LINC01006Q8NI28 216 aa11.98□□□□□ -0.49
COL7A1-210ENST00000487017 COX17Q14061 63 aa11.97□□□□□ -0.49
COL7A1-210ENST00000487017 EML5Q05BV3 1969 aa11.96□□□□□ -0.49
COL7A1-210ENST00000487017 M0R378 163 aa11.96□□□□□ -0.49
COL7A1-210ENST00000487017 EDN2P20800 178 aa11.96□□□□□ -0.49
COL7A1-210ENST00000487017 LINC00242Q5T6M2 205 aa11.96□□□□□ -0.49
COL7A1-210ENST00000487017 LELP1Q5T871 98 aa11.96□□□□□ -0.49
COL7A1-210ENST00000487017 M0QXV9 152 aa11.96□□□□□ -0.5
COL7A1-210ENST00000487017 A0A096LNJ9 63 aa11.96□□□□□ -0.5
COL7A1-210ENST00000487017 Q8IZM0 81 aa11.96□□□□□ -0.5
COL7A1-210ENST00000487017 COX7CP15954 63 aa11.95□□□□□ -0.5
COL7A1-210ENST00000487017 CRIP2P52943 208 aaPredicted RBP11.95□□□□□ -0.5
COL7A1-210ENST00000487017 C7orf33Q8WU49 177 aa11.95□□□□□ -0.5
COL7A1-210ENST00000487017 CUL9Q8IWT3 2517 aa11.95□□□□□ -0.5
COL7A1-210ENST00000487017 RPL37AP8A6NKH3 93 aa11.95□□□□□ -0.5
COL7A1-210ENST00000487017 IGHV4-30-4P0DP06 118 aa11.95□□□□□ -0.5
COL7A1-210ENST00000487017 CPAMD8Q8IZJ3 1885 aa11.95□□□□□ -0.5
COL7A1-210ENST00000487017 Q6Q795 121 aa11.94□□□□□ -0.5
COL7A1-210ENST00000487017 LINC00694P0DN24 101 aa11.94□□□□□ -0.5
COL7A1-210ENST00000487017 TSPEAR-AS2P59090 65 aa11.94□□□□□ -0.5
COL7A1-210ENST00000487017 COL5A1P20908 1838 aaPredicted RBP11.93□□□□□ -0.5
COL7A1-210ENST00000487017 NDUFC1O43677 76 aa11.93□□□□□ -0.5
COL7A1-210ENST00000487017 Q6JHZ5 121 aa11.93□□□□□ -0.5
COL7A1-210ENST00000487017 NAV3Q8IVL0 2385 aa11.93□□□□□ -0.5
COL7A1-210ENST00000487017 SORL1Q92673 2214 aa11.93□□□□□ -0.5
COL7A1-210ENST00000487017 AVPP01185 164 aa11.92□□□□□ -0.5
COL7A1-210ENST00000487017 OTOGLQ3ZCN5 2332 aa11.92□□□□□ -0.5
COL7A1-210ENST00000487017 ATP5EP56381 51 aaPredicted RBP11.92□□□□□ -0.5
COL7A1-210ENST00000487017 CHCHD7Q9BUK0 85 aa11.92□□□□□ -0.5
COL7A1-210ENST00000487017 DHRS4-AS1Q9P1J3 65 aa11.92□□□□□ -0.5
COL7A1-210ENST00000487017 IGLV9-49A0A0B4J1Y8 123 aa11.92□□□□□ -0.5
COL7A1-210ENST00000487017 MUC7Q8TAX7 377 aa11.92□□□□□ -0.5
COL7A1-210ENST00000487017 SMIM1B2RUZ4 78 aa11.91□□□□□ -0.5
COL7A1-210ENST00000487017 C1orf195Q5TG92 126 aa11.91□□□□□ -0.5
COL7A1-210ENST00000487017 ZNF843Q8N446 348 aa11.91□□□□□ -0.5
COL7A1-210ENST00000487017 KPRPQ5T749 579 aaPredicted RBP11.91□□□□□ -0.5
COL7A1-210ENST00000487017 PRR15LQ9BU68 103 aa11.91□□□□□ -0.5
COL7A1-210ENST00000487017 ZNF73O43830 326 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-210ENST00000487017 SONP18583 2426 aaKnown RBP11.9□□□□□ -0.5
COL7A1-210ENST00000487017 ODF3L2Q3SX64 289 aa11.9□□□□□ -0.51
COL7A1-210ENST00000487017 TRAV10A0A0B4J240 114 aa11.89□□□□□ -0.51
COL7A1-210ENST00000487017 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-210ENST00000487017 FAM19A3Q7Z5A8 133 aa11.89□□□□□ -0.51
COL7A1-210ENST00000487017 SHISA2Q6UWI4 295 aa11.88□□□□□ -0.51
COL7A1-210ENST00000487017 COX6A2Q02221 97 aa11.88□□□□□ -0.51
COL7A1-210ENST00000487017 BRI3O95415 125 aa11.88□□□□□ -0.51
COL7A1-210ENST00000487017 AMELXQ99217 191 aa11.88□□□□□ -0.51
COL7A1-210ENST00000487017 ARHGAP32A7KAX9 2087 aa11.87□□□□□ -0.51
COL7A1-210ENST00000487017 A6NED7 52 aa11.87□□□□□ -0.51
COL7A1-210ENST00000487017 RPL28P46779 137 aaKnown RBP11.87□□□□□ -0.51
COL7A1-210ENST00000487017 LY6G6DO95868 133 aa11.87□□□□□ -0.51
COL7A1-210ENST00000487017 FAM30AQ9NZY2 134 aa11.87□□□□□ -0.51
COL7A1-210ENST00000487017 CYSRT1A8MQ03 144 aa11.86□□□□□ -0.51
COL7A1-210ENST00000487017 LY6G6CO95867 125 aa11.86□□□□□ -0.51
COL7A1-210ENST00000487017 ADAMTSL4-AS1Q5T5F5 129 aa11.86□□□□□ -0.51
COL7A1-210ENST00000487017 Q8N9L7 120 aa11.85□□□□□ -0.51
COL7A1-210ENST00000487017 SERP1Q9Y6X1 66 aa11.84□□□□□ -0.51
COL7A1-210ENST00000487017 NTM-AS1Q6ZSK4 140 aa11.84□□□□□ -0.51
COL7A1-210ENST00000487017 PLAC8L1A1L4L8 177 aa11.83□□□□□ -0.52
COL7A1-210ENST00000487017 ZNF580Q9UK33 172 aa11.83□□□□□ -0.52
COL7A1-210ENST00000487017 ZNF706Q9Y5V0 76 aaPredicted RBP11.83□□□□□ -0.52
COL7A1-210ENST00000487017 RETNQ9HD89 108 aa11.83□□□□□ -0.52
COL7A1-210ENST00000487017 CSDC2Q9Y534 153 aaKnown RBP11.83□□□□□ -0.52
COL7A1-210ENST00000487017 PTPN13Q12923 2485 aa11.83□□□□□ -0.52
COL7A1-210ENST00000487017 Q8N814 137 aa11.82□□□□□ -0.52
COL7A1-210ENST00000487017 LOC107984640A0A0U1RRK4 108 aa11.82□□□□□ -0.52
COL7A1-210ENST00000487017 NANOS2P60321 138 aaKnown RBP11.81□□□□□ -0.52
COL7A1-210ENST00000487017 A0A087WYN8 130 aa11.81□□□□□ -0.52
COL7A1-210ENST00000487017 UNQ6190/PRO20217Q6UXQ8 127 aa11.81□□□□□ -0.52
COL7A1-210ENST00000487017 IGLV4-60A0A075B6I1 120 aa11.8□□□□□ -0.52
COL7A1-210ENST00000487017 CELA1Q9UNI1 258 aa11.8□□□□□ -0.52
COL7A1-210ENST00000487017 SRCAPQ6ZRS2 3230 aa11.79□□□□□ -0.52
COL7A1-210ENST00000487017 BEAN1Q3B7T3 259 aa11.79□□□□□ -0.52
COL7A1-210ENST00000487017 RAI1Q7Z5J4 1906 aaPredicted RBP11.79□□□□□ -0.52
COL7A1-210ENST00000487017 CACNA1AO00555 2505 aa11.78□□□□□ -0.52
COL7A1-210ENST00000487017 A0A1W2PPR1 153 aa11.78□□□□□ -0.52
COL7A1-210ENST00000487017 C9orf116Q5BN46 136 aaPredicted RBP11.78□□□□□ -0.52
COL7A1-210ENST00000487017 IGLV1-51P01701 117 aa11.78□□□□□ -0.52
COL7A1-210ENST00000487017 FHL2Q14192 279 aa11.77□□□□□ -0.52
COL7A1-210ENST00000487017 EXPH5Q8NEV8 1989 aa11.77□□□□□ -0.52
COL7A1-210ENST00000487017 Q6ZSN1 163 aa11.77□□□□□ -0.53
COL7A1-210ENST00000487017 SMIM26A0A096LP01 95 aa11.77□□□□□ -0.53
COL7A1-210ENST00000487017 EGFEM1PQ0D2K5 195 aa11.77□□□□□ -0.53
COL7A1-210ENST00000487017 C2CD3Q4AC94 2353 aa11.77□□□□□ -0.53
COL7A1-210ENST00000487017 TRAV7A0A075B6U4 112 aa11.76□□□□□ -0.53
COL7A1-210ENST00000487017 TRBV10-3A0A0K0K1G6 114 aa11.76□□□□□ -0.53
COL7A1-210ENST00000487017 LINC01546A6NGU7 62 aa11.75□□□□□ -0.53
COL7A1-210ENST00000487017 OXLD1Q5BKU9 147 aa11.75□□□□□ -0.53
COL7A1-210ENST00000487017 NAV2Q8IVL1 2488 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms