RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 DEFA5Q01523 94 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 ADIRFQ15847 76 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 COL5A1-AS1Q5SY13 56 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 S100A7L2Q5SY68 101 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 NCBP2-AS2Q69YL0 99 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 ALKAL2Q6UX46 152 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 DYNLRB2Q8TF09 96 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 SMIM4Q8WVI0 70 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 PPP1R1CQ8WVI7 109 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 SNRNP25Q9BV90 132 aaKnown RBP0.71□□□□□ -2.3
SMC4-218ENST00000486711 TMEM167BQ9NRX6 74 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 BET1LQ9NYM9 111 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 GNG8Q9UK08 70 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 V9GYH0 126 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 A0A0G2JMZ2 1700 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 LRRC37A2A6NM11 1700 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 LRRC37AA6NMS7 1700 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 LY75O60449 1722 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 AKAP11Q9UKA4 1901 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 TSC2P49815 1807 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 PHIPQ8WWQ0 1821 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 ZNF236Q9UL36 1845 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 KCPQ6ZWJ8 1503 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 TRBV20-1A0A075B6N2 111 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 TRAV30A0A087WSZ9 112 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 MCRIP1C9JLW8 97 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 H3BQ15 152 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 NDUFA2O43678 99 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 NDUFB6O95139 128 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 APODP05090 189 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 ASIPP42127 132 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 RBP2P50120 134 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 GNG4P50150 75 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 SEC11AP67812 179 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 DEFB106AQ8N104 65 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 LSM10Q969L4 123 aaKnown RBP0.7□□□□□ -2.3
SMC4-218ENST00000486711 AQP10Q96PS8 301 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 MGST2Q99735 147 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 PSMG3Q9BT73 122 aaPredicted RBP0.7□□□□□ -2.3
SMC4-218ENST00000486711 VAMP8Q9BV40 100 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 TMEM191AQ9H0A3 160 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 DYNLRB1Q9NP97 96 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 CMC2Q9NRP2 79 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 COA4Q9NYJ1 87 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 UQCR10Q9UDW1 63 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 PLXNB2O15031 1838 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 XIRP1Q702N8 1843 aaKnown RBP0.7□□□□□ -2.3
SMC4-218ENST00000486711 ARFGEF1Q9Y6D6 1849 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 ANKRD36A6QL64 1941 aa0.7□□□□□ -2.3
SMC4-218ENST00000486711 NHSQ6T4R5 1651 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 PSME4Q14997 1843 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 PARP14Q460N5 1801 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 NHSL1Q5SYE7 1610 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 FXYD6-FXYD2A0A087WZ82 144 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 LOC730098B7Z3J9 87 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 F2Z2F3 143 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 M0R2Z0 102 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 ARPC5O15511 151 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 PITX3O75364 302 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 SFT2D2O95562 160 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 MPC2O95563 127 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 HMGN2P05204 90 aaKnown RBP0.69□□□□□ -2.3
SMC4-218ENST00000486711 ATP5EP56381 51 aaPredicted RBP0.69□□□□□ -2.3
SMC4-218ENST00000486711 UBE2G1P62253 170 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 PYY3Q5JQD4 70 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 C12orf73Q69YU5 71 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 OR2T2Q6IF00 324 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 SLC48A1Q6P1K1 146 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 ATP11AUNQ6ZP68 121 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 BAGE3Q86Y29 109 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 BAGE2Q86Y30 109 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.69□□□□□ -2.3
SMC4-218ENST00000486711 FAM213BQ8TBF2 198 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 MYOZ3Q8TDC0 251 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 C12orf57Q99622 126 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 C2orf88Q9BSF0 95 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 FXYD6Q9H0Q3 95 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 ST20Q9HBF5 79 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 LENEPQ9Y5L5 61 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 R4GMQ9 66 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 MUC5ACP98088 5654 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 NINQ8N4C6 2090 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 TNS1Q9HBL0 1735 aaKnown RBP0.69□□□□□ -2.3
SMC4-218ENST00000486711 ZDBF2Q9HCK1 2354 aa0.69□□□□□ -2.3
SMC4-218ENST00000486711 CTXND1A0A1B0GTU2 59 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 ZNF815PA8K554 130 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 NDUFC1O43677 76 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 MRPL33O75394 65 aaKnown RBP0.68□□□□□ -2.3
SMC4-218ENST00000486711 LEPROTL1O95214 131 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 NCR2O95944 276 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 SFTA3P0C7M3 94 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 PLNP26678 52 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 HIST1H1AQ02539 215 aaPredicted RBP0.68□□□□□ -2.3
SMC4-218ENST00000486711 Q0VG73 95 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 SMIM21Q3B7S5 101 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 CYP2G1PQ6ZSU1 146 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 C9orf62Q8N4C0 152 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 TMEM141Q96I45 108 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 TRPM7Q96QT4 1865 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 LINC00470Q9BZP3 86 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms