RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 HMCN2Q8NDA2 5059 aa6.49□□□□□ -1.37
CPSF4-213ENST00000484112 GAGE12HA6NDE8 117 aa6.49□□□□□ -1.37
CPSF4-213ENST00000484112 OXTP01178 125 aa6.49□□□□□ -1.37
CPSF4-213ENST00000484112 IFI27P40305 119 aaPredicted RBP6.49□□□□□ -1.37
CPSF4-213ENST00000484112 CNBPP62633 177 aaKnown RBP6.49□□□□□ -1.37
CPSF4-213ENST00000484112 FABP9Q0Z7S8 132 aa6.49□□□□□ -1.37
CPSF4-213ENST00000484112 CD164L2Q6UWJ8 174 aa6.49□□□□□ -1.37
CPSF4-213ENST00000484112 AP5S1Q9NUS5 200 aa6.49□□□□□ -1.37
CPSF4-213ENST00000484112 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.48□□□□□ -1.37
CPSF4-213ENST00000484112 IGKV3OR2-268A0A0C4DH90 116 aa6.48□□□□□ -1.37
CPSF4-213ENST00000484112 PRSS1P07477 247 aa6.48□□□□□ -1.37
CPSF4-213ENST00000484112 NDUFA6P56556 154 aa6.48□□□□□ -1.37
CPSF4-213ENST00000484112 FOXI1Q12951 378 aa6.48□□□□□ -1.37
CPSF4-213ENST00000484112 CIRBP-AS1Q8TBR5 109 aa6.48□□□□□ -1.37
CPSF4-213ENST00000484112 CHAC1Q9BUX1 264 aa6.48□□□□□ -1.37
CPSF4-213ENST00000484112 MRPL18Q9H0U6 180 aaKnown RBP6.48□□□□□ -1.37
CPSF4-213ENST00000484112 LRP1Q07954 4544 aaKnown RBP6.47□□□□□ -1.37
CPSF4-213ENST00000484112 LOC389332A0A1B0GUA5 103 aa6.47□□□□□ -1.37
CPSF4-213ENST00000484112 KRTAP10-4P60372 401 aaPredicted RBP6.47□□□□□ -1.37
CPSF4-213ENST00000484112 RPL39P62891 51 aaKnown RBP6.47□□□□□ -1.37
CPSF4-213ENST00000484112 PAPPA-AS1Q5QFB9 102 aa6.47□□□□□ -1.37
CPSF4-213ENST00000484112 HIST3H2BBQ8N257 126 aa6.47□□□□□ -1.37
CPSF4-213ENST00000484112 C9orf163Q8N9P6 203 aa6.47□□□□□ -1.37
CPSF4-213ENST00000484112 ALKBH7Q9BT30 221 aaPredicted RBP6.47□□□□□ -1.37
CPSF4-213ENST00000484112 CYSLTR1Q9Y271 337 aa6.47□□□□□ -1.37
CPSF4-213ENST00000484112 GVQW2A0A096LPI5 108 aaPredicted RBP6.46□□□□□ -1.38
CPSF4-213ENST00000484112 IGHV1-58A0A0C4DH39 117 aa6.46□□□□□ -1.38
CPSF4-213ENST00000484112 hDV102S1A0JD36 115 aa6.46□□□□□ -1.38
CPSF4-213ENST00000484112 LINC01546A6NGU7 62 aa6.46□□□□□ -1.38
CPSF4-213ENST00000484112 XCL1P47992 114 aa6.46□□□□□ -1.38
CPSF4-213ENST00000484112 PKIGQ9Y2B9 76 aa6.46□□□□□ -1.38
CPSF4-213ENST00000484112 IFITM10A6NMD0 228 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 KIAA1644Q3SXP7 199 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 C2orf66Q6UXQ4 117 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 Q6ZN92 141 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 Q6ZUT4 128 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 C15orf56Q8N910 161 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 PRSS3P2Q8NHM4 247 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 TMEM141Q96I45 108 aa6.45□□□□□ -1.38
CPSF4-213ENST00000484112 TRAV13-1A0A0B4J241 112 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 COX7A2LO14548 114 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 APOMO95445 188 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 SMIM6P0DI80 62 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 RPL37AP61513 92 aaKnown RBP6.44□□□□□ -1.38
CPSF4-213ENST00000484112 TEX43Q6ZNM6 134 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 LINC00518Q8N0U6 118 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 FAM104AQ969W3 186 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 PACRGQ96M98 296 aaPredicted RBP6.44□□□□□ -1.38
CPSF4-213ENST00000484112 TIMM17AQ99595 171 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 C2orf88Q9BSF0 95 aa6.44□□□□□ -1.38
CPSF4-213ENST00000484112 FAT3Q8TDW7 4589 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 IGLV4-3A0A075B6K6 122 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 IGHV3-64A0A075B6Q5 118 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 IGIPA6NJ69 53 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 F8WDY8 70 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 MALP21145 153 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 AKR1D1P51857 326 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 TOMM6Q96B49 74 aa6.43□□□□□ -1.38
CPSF4-213ENST00000484112 IGHV3OR16-9A0A0B4J2B5 98 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 ZNF561-AS1K7EIQ3 104 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 S100A2P29034 98 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 HNRNPA3P51991 378 aaKnown RBP6.42□□□□□ -1.38
CPSF4-213ENST00000484112 SEC11AP67812 179 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 FA2HQ7L5A8 372 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 ERASQ7Z444 233 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 FAM19A3Q7Z5A8 133 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 LINC01561Q8N1V8 128 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 OR10D4PQ8NGN7 298 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 AMELXQ99217 191 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 HIST1H2BLQ99880 126 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 VCX2Q9H322 139 aa6.42□□□□□ -1.38
CPSF4-213ENST00000484112 LINC00310P59036 64 aa6.41□□□□□ -1.38
CPSF4-213ENST00000484112 RNASE13Q5GAN3 156 aaKnown RBP6.41□□□□□ -1.38
CPSF4-213ENST00000484112 SDIM1Q6ZPB5 146 aa6.41□□□□□ -1.38
CPSF4-213ENST00000484112 C2orf48Q96LS8 159 aa6.41□□□□□ -1.38
CPSF4-213ENST00000484112 SLPIP03973 132 aa6.4□□□□□ -1.38
CPSF4-213ENST00000484112 UBE2D1P51668 147 aa6.4□□□□□ -1.38
CPSF4-213ENST00000484112 CIRBPQ14011 172 aaKnown RBP6.4□□□□□ -1.38
CPSF4-213ENST00000484112 HIGD2BQ4VC39 106 aa6.4□□□□□ -1.38
CPSF4-213ENST00000484112 C18orf32Q8TCD1 76 aa6.4□□□□□ -1.38
CPSF4-213ENST00000484112 OPRPNQ99935 248 aaPredicted RBP6.4□□□□□ -1.38
CPSF4-213ENST00000484112 A0A087WZ39 114 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 SERF1AO75920 110 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 LINC00614P0C842 121 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 FABP4P15090 132 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 LINC00242Q5T6M2 205 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 BAGE3Q86Y29 109 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 SCGB3A1Q96QR1 104 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 C12orf57Q99622 126 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 LINC00474Q9P2X8 69 aa6.39□□□□□ -1.39
CPSF4-213ENST00000484112 IGLV4-69A0A075B6H9 119 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 HERVK_113P63121 156 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 SYCNQ0VAF6 134 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 RNF151Q2KHN1 245 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 PDZD11Q5EBL8 140 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 LINC00173Q6ZV60 143 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 C5orf38Q86SI9 138 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 CARD19Q96LW7 228 aa6.38□□□□□ -1.39
CPSF4-213ENST00000484112 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.37□□□□□ -1.39
CPSF4-213ENST00000484112 NUPR1O60356 82 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 149.6 ms