RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 LINC00694P0DN24 101 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 COX7CP15954 63 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 MALP21145 153 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 C22orf24Q9Y442 160 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 SMIM9A6NGZ8 99 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 J3QLI3 93 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 ITPR2Q14571 2701 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 CRYBG3Q68DQ2 2970 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 TRAV13-1A0A0B4J241 112 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 ATOX1O00244 68 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 CRPP02741 224 aa9.53□□□□□ -0.88
USP40-214ENST00000483519 RPL28P46779 137 aaKnown RBP9.53□□□□□ -0.88
USP40-214ENST00000483519 C6orf226Q5I0X4 101 aa9.52□□□□□ -0.89
USP40-214ENST00000483519 UBE2E2Q96LR5 201 aa9.52□□□□□ -0.89
USP40-214ENST00000483519 IGHV4-30-2A0A087WSY4 118 aa9.52□□□□□ -0.89
USP40-214ENST00000483519 INSP01308 110 aa9.52□□□□□ -0.89
USP40-214ENST00000483519 SORL1Q92673 2214 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 DNAL4O96015 105 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 AVPP01185 164 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 FBN2P35556 2912 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 B4DSR2 109 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 DEFB112Q30KQ8 113 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 Q96MF0 132 aa9.51□□□□□ -0.89
USP40-214ENST00000483519 HIST1H4AP62805 103 aaKnown RBP9.5□□□□□ -0.89
USP40-214ENST00000483519 Q9HAA7 133 aa9.5□□□□□ -0.89
USP40-214ENST00000483519 CCDC168Q8NDH2 2452 aa9.5□□□□□ -0.89
USP40-214ENST00000483519 RPL36AP83881 106 aaKnown RBP9.5□□□□□ -0.89
USP40-214ENST00000483519 RPL36ALQ969Q0 106 aaKnown RBP9.5□□□□□ -0.89
USP40-214ENST00000483519 CELSR1Q9NYQ6 3014 aa9.5□□□□□ -0.89
USP40-214ENST00000483519 A0A1B0GX51 115 aa9.49□□□□□ -0.89
USP40-214ENST00000483519 J3KT08 172 aa9.49□□□□□ -0.89
USP40-214ENST00000483519 CRYGAP11844 174 aa9.49□□□□□ -0.89
USP40-214ENST00000483519 KRTAP1-3Q8IUG1 177 aa9.49□□□□□ -0.89
USP40-214ENST00000483519 V9GYY9 64 aa9.49□□□□□ -0.89
USP40-214ENST00000483519 KIR2DL5BQ8NHK3 375 aa9.49□□□□□ -0.89
USP40-214ENST00000483519 TRBV10-1A0A0K0K1A3 114 aa9.48□□□□□ -0.89
USP40-214ENST00000483519 CDC42SE2Q9NRR3 84 aa9.48□□□□□ -0.89
USP40-214ENST00000483519 WFDC11Q8NEX6 87 aa9.48□□□□□ -0.89
USP40-214ENST00000483519 C2orf48Q96LS8 159 aa9.48□□□□□ -0.89
USP40-214ENST00000483519 MAP6D1Q9H9H5 199 aa9.48□□□□□ -0.89
USP40-214ENST00000483519 SLURP1P55000 103 aa9.47□□□□□ -0.89
USP40-214ENST00000483519 SND1-IT1Q9HBX3 110 aa9.47□□□□□ -0.89
USP40-214ENST00000483519 K7EQD1 137 aa9.47□□□□□ -0.89
USP40-214ENST00000483519 PDZD2O15018 2839 aa9.46□□□□□ -0.89
USP40-214ENST00000483519 RPL18AQ02543 176 aaKnown RBP9.46□□□□□ -0.89
USP40-214ENST00000483519 LINC00337Q8N6G1 96 aa9.46□□□□□ -0.89
USP40-214ENST00000483519 CREBBPQ92793 2442 aa9.46□□□□□ -0.9
USP40-214ENST00000483519 MYO9AB2RTY4 2548 aa9.46□□□□□ -0.9
USP40-214ENST00000483519 CYSRT1A8MQ03 144 aa9.46□□□□□ -0.9
USP40-214ENST00000483519 H0YGX0 51 aa9.46□□□□□ -0.9
USP40-214ENST00000483519 NTM-AS1Q6ZSK4 140 aa9.46□□□□□ -0.9
USP40-214ENST00000483519 MIR7-3HGQ8N6C7 128 aa9.46□□□□□ -0.9
USP40-214ENST00000483519 TRGV1A0A0A0MS02 117 aa9.45□□□□□ -0.9
USP40-214ENST00000483519 UBE2L6O14933 153 aa9.45□□□□□ -0.9
USP40-214ENST00000483519 Q6JHZ5 121 aa9.45□□□□□ -0.9
USP40-214ENST00000483519 KLK5Q9Y337 293 aaPredicted RBP9.45□□□□□ -0.9
USP40-214ENST00000483519 SETXQ7Z333 2677 aaKnown RBP9.45□□□□□ -0.9
USP40-214ENST00000483519 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.45□□□□□ -0.99e-8■■■■■ 29.1
USP40-214ENST00000483519 A0A096LNT2 108 aa9.45□□□□□ -0.9
USP40-214ENST00000483519 COX7B2Q8TF08 81 aa9.45□□□□□ -0.9
USP40-214ENST00000483519 DYNLRB2Q8TF09 96 aa9.45□□□□□ -0.9
USP40-214ENST00000483519 IGKV2-28A0A075B6P5 120 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 IGKV2D-28P01615 120 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 DEFB136Q30KP8 78 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 SMIM11BQ8TCY0 68 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 C14orf132Q9NPU4 83 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 A0A087WYN8 130 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 LOC107984640A0A0U1RRK4 108 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 ZNF702PQ9H963 129 aa9.44□□□□□ -0.9
USP40-214ENST00000483519 RPS28P62857 69 aaKnown RBP9.43□□□□□ -0.9
USP40-214ENST00000483519 LINC01356Q8N9X3 169 aa9.43□□□□□ -0.9
USP40-214ENST00000483519 OBSCN-AS1Q96MR7 158 aa9.43□□□□□ -0.9
USP40-214ENST00000483519 TMEM243Q9BU79 118 aa9.43□□□□□ -0.9
USP40-214ENST00000483519 IL17DQ8TAD2 202 aa9.43□□□□□ -0.9
USP40-214ENST00000483519 XCL2Q9UBD3 114 aa9.42□□□□□ -0.9
USP40-214ENST00000483519 hADV29S1A0JD25 119 aa9.42□□□□□ -0.9
USP40-214ENST00000483519 FSHBP01225 129 aa9.42□□□□□ -0.9
USP40-214ENST00000483519 LINC00158P58513 81 aa9.42□□□□□ -0.9
USP40-214ENST00000483519 NBPF19A0A087WUL8 3843 aa9.42□□□□□ -0.9
USP40-214ENST00000483519 SERP2Q8N6R1 65 aa9.41□□□□□ -0.9
USP40-214ENST00000483519 TOMM7Q9P0U1 55 aa9.41□□□□□ -0.9
USP40-214ENST00000483519 IGKV3D-7A0A0C4DH55 119 aa9.4□□□□□ -0.9
USP40-214ENST00000483519 C18orf65Q6ZTR6 163 aa9.4□□□□□ -0.9
USP40-214ENST00000483519 LINC00846Q9NV44 126 aa9.4□□□□□ -0.9
USP40-214ENST00000483519 TMEM258P61165 79 aa9.4□□□□□ -0.9
USP40-214ENST00000483519 IGHV4-31P0DP07 118 aa9.4□□□□□ -0.91
USP40-214ENST00000483519 C9orf129Q5T035 196 aaKnown RBP9.4□□□□□ -0.91
USP40-214ENST00000483519 FAM19A5Q7Z5A7 132 aaPredicted RBP9.4□□□□□ -0.91
USP40-214ENST00000483519 LECT2O14960 151 aa9.39□□□□□ -0.91
USP40-214ENST00000483519 CCL18P55774 89 aa9.39□□□□□ -0.91
USP40-214ENST00000483519 IBA57-AS1B1ANH7 110 aa9.39□□□□□ -0.91
USP40-214ENST00000483519 DEFB114Q30KQ6 69 aa9.39□□□□□ -0.91
USP40-214ENST00000483519 Q6ZTI0 123 aa9.39□□□□□ -0.91
USP40-214ENST00000483519 C1orf158Q8N1D5 194 aa9.39□□□□□ -0.91
USP40-214ENST00000483519 CR1P17927 2039 aa9.38□□□□□ -0.91
USP40-214ENST00000483519 ITPR3Q14573 2671 aa9.38□□□□□ -0.91
USP40-214ENST00000483519 MAPK1IP1LQ8NDC0 245 aa9.38□□□□□ -0.91
USP40-214ENST00000483519 CSPG4Q6UVK1 2322 aa9.38□□□□□ -0.91
USP40-214ENST00000483519 OR13C6PQ8NH95 151 aa9.38□□□□□ -0.91
USP40-214ENST00000483519 C4orf3Q8WVX3 66 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms