RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 USP9YO00507 2555 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-207ENST00000479965 C19orf84I3L1E1 186 aa13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 PAX4O43316 350 aa13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 PF4P02776 101 aa13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 TMEM258P61165 79 aa13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 CDC42SE2Q9NRR3 84 aa13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 Q6JHZ5 121 aa13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 C11orf68Q9H3H3 251 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-207ENST00000479965 HILS1P60008 231 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 DEFB112Q30KQ8 113 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 KHDC1LQ5JSQ8 128 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 MYO9AB2RTY4 2548 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 IGHV4-30-2A0A087WSY4 118 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 TMEM89A2RUT3 159 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 C18orf65Q6ZTR6 163 aa13.36□□□□□ -0.27
CCDC88B-207ENST00000479965 MSMBP08118 114 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 C4orf26Q17RF5 130 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 OVOL2Q9BRP0 275 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 NCOR2Q9Y618 2525 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 COX7B2Q8TF08 81 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 OXTP01178 125 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 WNK1Q9H4A3 2382 aa13.35□□□□□ -0.27
CCDC88B-207ENST00000479965 INSP01308 110 aa13.34□□□□□ -0.27
CCDC88B-207ENST00000479965 CCL18P55774 89 aa13.34□□□□□ -0.27
CCDC88B-207ENST00000479965 TRAV23DV6A0A075B6W5 121 aa13.33□□□□□ -0.28
CCDC88B-207ENST00000479965 RNASE1P07998 156 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-207ENST00000479965 HRCT1Q6UXD1 115 aa13.33□□□□□ -0.28
CCDC88B-207ENST00000479965 H0YGX0 51 aa13.33□□□□□ -0.28
CCDC88B-207ENST00000479965 UPK3BQ9BT76 320 aa13.32□□□□□ -0.28
CCDC88B-207ENST00000479965 ZANQ9Y493 2812 aa13.31□□□□□ -0.28
CCDC88B-207ENST00000479965 Q6ZTI0 123 aa13.31□□□□□ -0.28
CCDC88B-207ENST00000479965 C10orf105Q8TEF2 133 aa13.31□□□□□ -0.28
CCDC88B-207ENST00000479965 K7EQD1 137 aa13.3□□□□□ -0.28
CCDC88B-207ENST00000479965 DYNLRB2Q8TF09 96 aa13.3□□□□□ -0.28
CCDC88B-207ENST00000479965 CCL19Q99731 98 aa13.3□□□□□ -0.28
CCDC88B-207ENST00000479965 MAP6D1Q9H9H5 199 aa13.3□□□□□ -0.28
CCDC88B-207ENST00000479965 CHD8Q9HCK8 2581 aa13.3□□□□□ -0.28
CCDC88B-207ENST00000479965 GHRHP01286 108 aa13.29□□□□□ -0.28
CCDC88B-207ENST00000479965 TMEM243Q9BU79 118 aa13.29□□□□□ -0.28
CCDC88B-207ENST00000479965 FHL2Q14192 279 aa13.28□□□□□ -0.28
CCDC88B-207ENST00000479965 ORMDL1Q9P0S3 153 aa13.28□□□□□ -0.28
CCDC88B-207ENST00000479965 USP9XQ93008 2570 aaPredicted RBP13.27□□□□□ -0.29
CCDC88B-207ENST00000479965 LOC100131303A0A0U1RQF7 123 aa13.27□□□□□ -0.29
CCDC88B-207ENST00000479965 FAM19A3Q7Z5A8 133 aa13.27□□□□□ -0.29
CCDC88B-207ENST00000479965 FAM19A1Q7Z5A9 133 aa13.27□□□□□ -0.29
CCDC88B-207ENST00000479965 MAPK1IP1LQ8NDC0 245 aa13.26□□□□□ -0.29
CCDC88B-207ENST00000479965 JMJD1CQ15652 2540 aa13.26□□□□□ -0.29
CCDC88B-207ENST00000479965 ENHOQ6UWT2 76 aa13.26□□□□□ -0.29
CCDC88B-207ENST00000479965 C20orf197Q8N268 126 aa13.26□□□□□ -0.29
CCDC88B-207ENST00000479965 OBSCN-AS1Q96MR7 158 aa13.25□□□□□ -0.29
CCDC88B-207ENST00000479965 UCNP55089 124 aa13.24□□□□□ -0.29
CCDC88B-207ENST00000479965 NOP10Q9NPE3 64 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-207ENST00000479965 B4DSR2 109 aa13.23□□□□□ -0.29
CCDC88B-207ENST00000479965 CCKP06307 115 aa13.23□□□□□ -0.29
CCDC88B-207ENST00000479965 STHQ8IWL8 128 aa13.23□□□□□ -0.29
CCDC88B-207ENST00000479965 POLQO75417 2590 aa13.23□□□□□ -0.29
CCDC88B-207ENST00000479965 ITPR1Q14643 2758 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 TLN2Q9Y4G6 2542 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 IGLV4-60A0A075B6I1 120 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 TRBV10-1A0A0K0K1A3 114 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 TRGV2A0A075B6R0 118 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 TRAV25A0A0B4J276 109 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 A8MTW9 85 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 PRR3P79522 188 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 C6orf226Q5I0X4 101 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 C1orf158Q8N1D5 194 aa13.22□□□□□ -0.29
CCDC88B-207ENST00000479965 SETD2Q9BYW2 2564 aaPredicted RBP13.21□□□□□ -0.29
CCDC88B-207ENST00000479965 SS18Q15532 418 aa13.21□□□□□ -0.3
CCDC88B-207ENST00000479965 CHD6Q8TD26 2715 aa13.2□□□□□ -0.3
CCDC88B-207ENST00000479965 MXRA5Q9NR99 2828 aa13.2□□□□□ -0.3
CCDC88B-207ENST00000479965 Q5XG85 94 aa13.19□□□□□ -0.3
CCDC88B-207ENST00000479965 IBA57-AS1B1ANH7 110 aa13.19□□□□□ -0.3
CCDC88B-207ENST00000479965 S100A7L2Q5SY68 101 aa13.17□□□□□ -0.3
CCDC88B-207ENST00000479965 CENPEQ02224 2701 aa13.17□□□□□ -0.3
CCDC88B-207ENST00000479965 TRBV6-4A0A1B0GX49 114 aa13.17□□□□□ -0.3
CCDC88B-207ENST00000479965 ZNF702PQ9H963 129 aa13.17□□□□□ -0.3
CCDC88B-207ENST00000479965 GNLYP22749 145 aa13.16□□□□□ -0.3
CCDC88B-207ENST00000479965 IGHV3OR16-9A0A0B4J2B5 98 aa13.16□□□□□ -0.3
CCDC88B-207ENST00000479965 PTPN13Q12923 2485 aa13.16□□□□□ -0.3
CCDC88B-207ENST00000479965 NBL1P41271 181 aa13.15□□□□□ -0.3
CCDC88B-207ENST00000479965 UBL5Q9BZL1 73 aa13.15□□□□□ -0.3
CCDC88B-207ENST00000479965 SPTBN4Q9H254 2564 aa13.15□□□□□ -0.3
CCDC88B-207ENST00000479965 XCL1P47992 114 aa13.15□□□□□ -0.3
CCDC88B-207ENST00000479965 DEFB114Q30KQ6 69 aa13.15□□□□□ -0.3
CCDC88B-207ENST00000479965 TRGV4A0A0C4DH28 118 aa13.15□□□□□ -0.31
CCDC88B-207ENST00000479965 ODF3L2Q3SX64 289 aa13.15□□□□□ -0.31
CCDC88B-207ENST00000479965 C11orf44Q8N8P7 122 aa13.15□□□□□ -0.31
CCDC88B-207ENST00000479965 JMJD7-PLA2G4BH0Y9G9 81 aa13.14□□□□□ -0.31
CCDC88B-207ENST00000479965 CLPSL2Q6UWE3 100 aa13.14□□□□□ -0.31
CCDC88B-207ENST00000479965 FBN2P35556 2912 aa13.14□□□□□ -0.31
CCDC88B-207ENST00000479965 PLA2G2AP14555 144 aa13.14□□□□□ -0.31
CCDC88B-207ENST00000479965 TMEM86BQ8N661 226 aa13.14□□□□□ -0.31
CCDC88B-207ENST00000479965 WIPF1O43516 503 aa13.13□□□□□ -0.31
CCDC88B-207ENST00000479965 NDUFC2O95298 119 aa13.13□□□□□ -0.31
CCDC88B-207ENST00000479965 Q8N814 137 aa13.12□□□□□ -0.31
CCDC88B-207ENST00000479965 FAM236DA0A1B0GTK5 79 aa13.12□□□□□ -0.31
CCDC88B-207ENST00000479965 FAM236CP0DP71 79 aa13.12□□□□□ -0.31
CCDC88B-207ENST00000479965 NIPBLQ6KC79 2804 aaeCLIP13.11□□□□□ -0.31
CCDC88B-207ENST00000479965 UTP20O75691 2785 aaKnown RBP13.11□□□□□ -0.31
CCDC88B-207ENST00000479965 A0A087WZ39 114 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms