RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TRBV6-5A0A0K0K1A5 114 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 hDV102S1A0JD36 115 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 SDHAF1A6NFY7 115 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 I3L3M4 83 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 SRP19P09132 144 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 PMCHP20382 165 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 CNBPP62633 177 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 FAM74A3Q4VXF1 159 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 C9orf163Q8N9P6 203 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 TMEM191AQ9H0A3 160 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 OSTCQ9NRP0 149 aa4.38□□□□□ -1.71
CCDC88A-213ENST00000476903 HERC1Q15751 4861 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 IGKV3OR2-268A0A0C4DH90 116 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 IGKV2-29A2NJV5 120 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 FGF6P10767 208 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 ZNF25P17030 456 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 RIGQ13278 110 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 TMEM241Q24JQ0 296 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 MRAP2Q96G30 205 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 ST20Q9HBF5 79 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 MYCBP2O75592 4640 aa4.37□□□□□ -1.71
CCDC88A-213ENST00000476903 UBR4Q5T4S7 5183 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 IGHV3-64A0A075B6Q5 118 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 M0QXV9 152 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 PEA15Q15121 130 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 SDIM1Q6ZPB5 146 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 AMN1Q8IY45 258 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 CHCHD10Q8WYQ3 142 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 ISOC2Q96AB3 205 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 RNF185Q96GF1 192 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 TMEM101Q96IK0 257 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 BTF3L4Q96K17 158 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 NAT8BQ9UHF3 227 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 V9GYV3 84 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 V9GYY9 64 aa4.36□□□□□ -1.71
CCDC88A-213ENST00000476903 TRBV27A0A0K0K1C4 114 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 GAS8-AS1O95177 125 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 TSPAN13O95857 204 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 PPP1R17O96001 155 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 TSHBP01222 138 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 RPS10P46783 165 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 RPL37AP61513 92 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 RPL23P62829 140 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 ADIRFQ15847 76 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 C15orf56Q8N910 161 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 NUP35Q8NFH5 326 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 OR5A1Q8NGJ0 315 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 SMDT1Q9H4I9 107 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 TMEM242Q9NWH2 141 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 NAT8Q9UHE5 227 aa4.35□□□□□ -1.71
CCDC88A-213ENST00000476903 SMIM27A0A1W2PRY6 76 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 C7orf77A4D0Y5 90 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 C9JQL5 133 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 VCYO14598 125 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 ESDP10768 282 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 FCER1GP30273 86 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 AKR1D1P51857 326 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 POLR2KP53803 58 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 KRTAP10-4P60372 401 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 CIRBPQ14011 172 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 HIGD2BQ4VC39 106 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 C10orf25Q5T742 122 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 KIR2DL4Q99706 377 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 SPANXCQ9NY87 97 aa4.34□□□□□ -1.71
CCDC88A-213ENST00000476903 GVQW2A0A096LPI5 108 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 LINC00959A0A1B0GUT2 108 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 SMKR1H3BMG3 65 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 PANO1I0J062 215 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 PPP1R2P9O14990 202 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 XCL1P47992 114 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 SMAGPQ0VAQ4 97 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 SS18Q15532 418 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 SPACA4Q8TDM5 124 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 DPH3Q96FX2 82 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 C14orf144Q96I85 54 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 CDC42SE2Q9NRR3 84 aa4.33□□□□□ -1.72
CCDC88A-213ENST00000476903 IGHV1-58A0A0C4DH39 117 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 LINC00862A6NCI5 91 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 CCL25O15444 150 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 OXTP01178 125 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 CHTF8P0CG12 524 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 HBBP68871 147 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 MRPL51Q4U2R6 128 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 FAM104BQ5XKR9 115 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 ZNF664Q8N3J9 261 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 TMEM18Q96B42 140 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 C20orf78Q9BR46 151 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 PKIGQ9Y2B9 76 aa4.32□□□□□ -1.72
CCDC88A-213ENST00000476903 A0A087WYN8 130 aa4.31□□□□□ -1.72
CCDC88A-213ENST00000476903 CKS2P33552 79 aa4.31□□□□□ -1.72
CCDC88A-213ENST00000476903 IFITM2Q01629 132 aa4.31□□□□□ -1.72
CCDC88A-213ENST00000476903 COX6A2Q02221 97 aa4.31□□□□□ -1.72
CCDC88A-213ENST00000476903 VPS25Q9BRG1 176 aa4.31□□□□□ -1.72
CCDC88A-213ENST00000476903 UBE2D4Q9Y2X8 147 aa4.31□□□□□ -1.72
CCDC88A-213ENST00000476903 TRBV24-1A0A075B6N3 115 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 C1orf196B1AJZ1 125 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 D6R8Y8 96 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 K7ERU9 68 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms