RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 ABCC1P33527 1531 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CUX1P39880 1505 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DUOX2Q9NRD8 1548 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 LRRC37A3O60309 1634 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 NWD2Q9ULI1 1742 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MKI67P46013 3256 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MYO7BQ6PIF6 2116 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 ACACAQ13085 2346 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MYO9AB2RTY4 2548 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SRCAPQ6ZRS2 3230 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MYO15AQ9UKN7 3530 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRBV7-3A0A075B6L6 115 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRAV30A0A087WSZ9 112 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRBV7-1A0A0A6YYK4 115 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRBV7-7A0A0K0K1E9 115 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 UBE2L5PA0A1B0GUS4 154 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 LOC105371267A0A1B0GV96 52 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 KANTRA0A1W2PQU2 76 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 RBAKDNA6NC62 111 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 A6NIN4 97 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 M0R2Z0 102 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DLEU1O43261 78 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 PITX3O75364 302 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 NDUFB6O95139 128 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 IL5P05113 134 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 COX6CP09669 75 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRAPPC2P0DI81 140 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRAPPC2BP0DI82 140 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SAA2P0DJI9 122 aaPredicted RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CBLN1P23435 193 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 S100A3P33764 101 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 RBP2P50120 134 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 GNG2P59768 71 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 UBE2G1P62253 170 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 PPP3R1P63098 170 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 UBE2L3P68036 154 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 HIST1H1AQ02539 215 aaPredicted RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 Q0VG73 95 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 COX17Q14061 63 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 INSL4Q14641 139 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DEFB114Q30KQ6 69 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 Q56UQ5 140 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DEFB121Q5J5C9 76 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 COL5A1-AS1Q5SY13 56 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 FAM74A4Q5TZK3 123 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SPANXN1Q5VSR9 72 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 Q6AWC8 147 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 OR2T2Q6IF00 324 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SFTA2Q6UW10 78 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 Q6ZUT4 128 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 COMMD6Q7Z4G1 85 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 VMO1Q7Z5L0 202 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 VSTM2AQ8TAG5 236 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 FAM213BQ8TBF2 198 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DYNLRB2Q8TF09 96 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SMIM4Q8WVI0 70 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DPH3Q96FX2 82 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 FAM167A-AS1Q96KT0 104 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TRGV9Q99603 122 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MGST2Q99735 147 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CNFNQ9BYD5 112 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DPY30Q9C005 99 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 BPESC1Q9GZL8 116 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 AGPAT4-IT1Q9H0P7 198 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DYNLRB1Q9NP97 96 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 BET1LQ9NYM9 111 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 LENEPQ9Y5L5 61 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SERP1Q9Y6X1 66 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 V9GYS6 101 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TNXBP22105 4242 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MED14O60244 1454 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 ATP10BO94823 1461 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CFTRP13569 1480 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 PTPRMP28827 1452 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 NKTRP30414 1462 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 FYCO1Q9BQS8 1478 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 NLRP1Q9C000 1473 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 DNAH2Q9P225 4427 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 TTC37Q6PGP7 1564 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 LAMB1P07942 1786 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 MYH9P35579 1960 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 PKDREJQ9NTG1 2253 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 IGF2RP11717 2491 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CCDC168Q8NDH2 2452 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 COL6A3P12111 3177 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 WDFY4Q6ZS81 3184 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 XIRP2A4UGR9 3374 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 VPS13DQ5THJ4 4388 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 LAMA3Q16787 3333 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SPG11Q96JI7 2443 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SBF2Q86WG5 1849 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 NALCNQ8IZF0 1738 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 PRDM15P57071 1507 aaPredicted RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CDK13Q14004 1512 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 ERICH3Q5RHP9 1530 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 CPSF1Q10570 1443 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 EDC4Q6P2E9 1401 aaKnown RBP0.13□□□□□ -2.39
PTCD3-209ENST00000472044 SCAPERQ9BY12 1400 aa0.13□□□□□ -2.39
PTCD3-209ENST00000472044 LPAP08519 4548 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms