RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 CCL25O15444 150 aa6.5□□□□□ -1.37
SF3A1-207ENST00000471342 ZNF22P17026 224 aaPredicted RBP6.5□□□□□ -1.37
SF3A1-207ENST00000471342 G0S2P27469 103 aa6.5□□□□□ -1.37
SF3A1-207ENST00000471342 KIAA0087Q14695 138 aa6.5□□□□□ -1.37
SF3A1-207ENST00000471342 MIAQ16674 131 aa6.5□□□□□ -1.37
SF3A1-207ENST00000471342 CDKN2A-AS1Q9UH64 79 aa6.5□□□□□ -1.37
SF3A1-207ENST00000471342 APOBP04114 4563 aaKnown RBP6.49□□□□□ -1.37
SF3A1-207ENST00000471342 TINCRA0A1B0GVN0 87 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 CD164L2Q6UWJ8 174 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 TEX43Q6ZNM6 134 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 C10orf126Q8N4M7 172 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 OR10D4PQ8NGN7 298 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 TMEM101Q96IK0 257 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 HSPB8Q9UJY1 196 aa6.49□□□□□ -1.37
SF3A1-207ENST00000471342 A0A087WZ39 114 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 TRAV8-4A0A0B4J246 113 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 IGKV3OR2-268A0A0C4DH90 116 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 IGLV5-39A0A0G2JS06 123 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 GAGE12HA6NDE8 117 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 F8VRH5 84 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 S100A6P06703 90 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 TTC32Q5I0X7 151 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 PYY3Q5JQD4 70 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 PET117Q6UWS5 81 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 C6orf223Q8N319 242 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 Q9HAA7 133 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 RYR1P21817 5038 aa6.48□□□□□ -1.37
SF3A1-207ENST00000471342 TRAV8-3A0A0A6YYJ7 113 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 A0A1B0GVY2 172 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 SMIM1B2RUZ4 78 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 XCL1P47992 114 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 TNP2Q05952 138 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 DGAT2L7PQ6IED9 249 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 CHTOPQ9Y3Y2 248 aaKnown RBP6.47□□□□□ -1.37
SF3A1-207ENST00000471342 BIRC6Q9NR09 4857 aa6.47□□□□□ -1.37
SF3A1-207ENST00000471342 TRAV9-2A0A087WT02 112 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 TMEM223A0PJW6 202 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 LCE2BO14633 110 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 PRSS1P07477 247 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 TSPEAR-AS2P59090 65 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 JOSD1Q15040 202 aaPredicted RBP6.46□□□□□ -1.38
SF3A1-207ENST00000471342 MAJINQ3KP22 176 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 Q6ZN92 141 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 C5orf38Q86SI9 138 aa6.46□□□□□ -1.38
SF3A1-207ENST00000471342 A0A087WTM6 91 aa6.45□□□□□ -1.38
SF3A1-207ENST00000471342 KRTDAPP60985 99 aa6.45□□□□□ -1.38
SF3A1-207ENST00000471342 SMAGPQ0VAQ4 97 aa6.45□□□□□ -1.38
SF3A1-207ENST00000471342 LINC01561Q8N1V8 128 aa6.45□□□□□ -1.38
SF3A1-207ENST00000471342 MAP1LC3CQ9BXW4 147 aa6.45□□□□□ -1.38
SF3A1-207ENST00000471342 IGHV3-64A0A075B6Q5 118 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 IGKV2D-24A0A075B6R9 120 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 IGKV2D-26A0A0A0MRZ7 120 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 ANKRD39Q53RE8 183 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 PAPPA-AS1Q5QFB9 102 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 C1orf134Q5TEV5 83 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 CHAC1Q9BUX1 264 aa6.44□□□□□ -1.38
SF3A1-207ENST00000471342 USP17L23D6RBM5 183 aa6.43□□□□□ -1.38
SF3A1-207ENST00000471342 FUSP35637 526 aaKnown RBP eCLIP6.43□□□□□ -1.38
SF3A1-207ENST00000471342 HERVK_113P63121 156 aa6.43□□□□□ -1.38
SF3A1-207ENST00000471342 SS18Q15532 418 aa6.43□□□□□ -1.38
SF3A1-207ENST00000471342 STPG4Q8N801 248 aa6.43□□□□□ -1.38
SF3A1-207ENST00000471342 LINC00526Q96FQ7 95 aa6.43□□□□□ -1.38
SF3A1-207ENST00000471342 C1orf43Q9BWL3 253 aa6.43□□□□□ -1.38
SF3A1-207ENST00000471342 GVQW2A0A096LPI5 108 aaPredicted RBP6.42□□□□□ -1.38
SF3A1-207ENST00000471342 H0Y8G0 127 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 LECT2O14960 151 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 CRPP02741 224 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 SPINK8P0C7L1 97 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 S100A2P29034 98 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 KRTAP10-2P60368 255 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 C10orf25Q5T742 122 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 ATOH7Q8N100 152 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 C2orf88Q9BSF0 95 aa6.42□□□□□ -1.38
SF3A1-207ENST00000471342 hDV102S1A0JD36 115 aa6.41□□□□□ -1.38
SF3A1-207ENST00000471342 COX7A2LO14548 114 aa6.41□□□□□ -1.38
SF3A1-207ENST00000471342 DPM2O94777 84 aa6.41□□□□□ -1.38
SF3A1-207ENST00000471342 IGKCP01834 107 aa6.41□□□□□ -1.38
SF3A1-207ENST00000471342 ZNF625Q96I27 306 aaPredicted RBP6.41□□□□□ -1.38
SF3A1-207ENST00000471342 KIAA1109Q2LD37 5005 aa6.41□□□□□ -1.38
SF3A1-207ENST00000471342 IGHV1-58A0A0C4DH39 117 aa6.4□□□□□ -1.38
SF3A1-207ENST00000471342 PLNP26678 52 aa6.4□□□□□ -1.38
SF3A1-207ENST00000471342 LINC00469Q8N7U9 141 aa6.4□□□□□ -1.38
SF3A1-207ENST00000471342 TTTY13Q9BZ97 58 aa6.4□□□□□ -1.38
SF3A1-207ENST00000471342 E9PLD3 99 aa6.39□□□□□ -1.39
SF3A1-207ENST00000471342 SEC11AP67812 179 aa6.39□□□□□ -1.39
SF3A1-207ENST00000471342 Q8N814 137 aa6.39□□□□□ -1.39
SF3A1-207ENST00000471342 TM2D2Q9BX73 214 aa6.39□□□□□ -1.39
SF3A1-207ENST00000471342 TP73-AS1Q9UF72 201 aa6.39□□□□□ -1.39
SF3A1-207ENST00000471342 HSPG2P98160 4391 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 HIGD2BQ4VC39 106 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 TMEM170BQ5T4T1 132 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 C2orf82Q6UX34 121 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 UNQ6190/PRO20217Q6UXQ8 127 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 Q8IZM0 81 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 GEMIN7Q9H840 131 aaKnown RBP6.38□□□□□ -1.39
SF3A1-207ENST00000471342 COX11Q9Y6N1 276 aa6.38□□□□□ -1.39
SF3A1-207ENST00000471342 CNBPP62633 177 aaKnown RBP6.37□□□□□ -1.39
SF3A1-207ENST00000471342 Q6ZRU5 148 aa6.37□□□□□ -1.39
SF3A1-207ENST00000471342 RMI2Q96E14 147 aa6.37□□□□□ -1.39
SF3A1-207ENST00000471342 C6orf48Q9UBA6 75 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms