RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 CNOT1A5YKK6 2376 aaKnown RBP-0.72□□□□□ -2.53
LRCH3-211ENST00000466054 CUBNO60494 3623 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 PAPPAQ13219 1627 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 TPPP2P59282 170 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 Q6JHZ5 121 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 NAA60Q9H7X0 242 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 NDUFA4L2Q9NRX3 87 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 PKD1P98161 4303 aa-0.73□□□□□ -2.53
LRCH3-211ENST00000466054 FXYD6-FXYD2A0A087WZ82 144 aa-0.74□□□□□ -2.53
LRCH3-211ENST00000466054 APOC3P02656 99 aa-0.74□□□□□ -2.53
LRCH3-211ENST00000466054 ARL11Q969Q4 196 aa-0.74□□□□□ -2.53
LRCH3-211ENST00000466054 MGST2Q99735 147 aa-0.74□□□□□ -2.53
LRCH3-211ENST00000466054 LINC00470Q9BZP3 86 aa-0.74□□□□□ -2.53
LRCH3-211ENST00000466054 CMYA5Q8N3K9 4069 aa-0.74□□□□□ -2.53
LRCH3-211ENST00000466054 PRRC2CQ9Y520 2896 aaKnown RBP-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 CHD8Q9HCK8 2581 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 TEX15Q9BXT5 2789 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 LOC730098B7Z3J9 87 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 F8VRH5 84 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 DYNLRB1Q9NP97 96 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 LAMA1P25391 3075 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 LAMA3Q16787 3333 aa-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 RIMS1Q86UR5 1692 aaKnown RBP-0.75□□□□□ -2.53
LRCH3-211ENST00000466054 DYNC1H1Q14204 4646 aaKnown RBP-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 FAM25AB3EWG3 89 aa-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 FAM25CB3EWG5 89 aa-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 FAM25GB3EWG6 89 aa-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 TNFP01375 233 aa-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 DNAH9Q9NYC9 4486 aa-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 CSPG4Q6UVK1 2322 aa-0.76□□□□□ -2.53
LRCH3-211ENST00000466054 LYSTQ99698 3801 aa-0.77□□□□□ -2.53
LRCH3-211ENST00000466054 MYH7P12883 1935 aa-0.77□□□□□ -2.53
LRCH3-211ENST00000466054 TRBV7-3A0A075B6L6 115 aa-0.77□□□□□ -2.53
LRCH3-211ENST00000466054 BTG2P78543 158 aa-0.77□□□□□ -2.53
LRCH3-211ENST00000466054 MEIG1Q5JSS6 88 aa-0.77□□□□□ -2.53
LRCH3-211ENST00000466054 PPP3R2Q96LZ3 170 aa-0.77□□□□□ -2.53
LRCH3-211ENST00000466054 PHLPP1O60346 1717 aa-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 SPTBN4Q9H254 2564 aa-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 Q56UQ5 140 aa-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 LINC01558Q9Y6Z2 57 aa-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 ANKRD11Q6UB99 2663 aaPredicted RBP-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 FOCADQ5VW36 1801 aa-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 SPTA1P02549 2419 aa-0.78□□□□□ -2.53
LRCH3-211ENST00000466054 TSC2P49815 1807 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 PCNX1Q96RV3 2341 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 IGLC7A0M8Q6 106 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 K7EQZ3 153 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 COX6B1P14854 86 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 CCDC58Q4VC31 144 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 SPRR2FQ96RM1 72 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 SPANXDQ9BXN6 97 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 APOBP04114 4563 aaKnown RBP-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 DNAH11Q96DT5 4516 aa-0.79□□□□□ -2.54
LRCH3-211ENST00000466054 IQSEC2Q5JU85 1478 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 SHANK2Q9UPX8 1470 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 WDR7Q9Y4E6 1490 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 CPSF1Q10570 1443 aaKnown RBP-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 NAIPQ13075 1403 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 LOC285095A0A1B0GVY8 99 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 M0R2T5 61 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 RAPGEF6Q8TEU7 1601 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 AKAP13Q12802 2813 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 COL12A1Q99715 3063 aa-0.8□□□□□ -2.54
LRCH3-211ENST00000466054 SACSQ9NZJ4 4579 aa-0.81□□□□□ -2.54
LRCH3-211ENST00000466054 GNG7O60262 68 aa-0.81□□□□□ -2.54
LRCH3-211ENST00000466054 CELSR3Q9NYQ7 3312 aa-0.81□□□□□ -2.54
LRCH3-211ENST00000466054 DNAH1Q9P2D7 4330 aa-0.81□□□□□ -2.54
LRCH3-211ENST00000466054 PSME4Q14997 1843 aa-0.82□□□□□ -2.54
LRCH3-211ENST00000466054 HMGN4O00479 90 aa-0.82□□□□□ -2.54
LRCH3-211ENST00000466054 NDUFA2O43678 99 aa-0.82□□□□□ -2.54
LRCH3-211ENST00000466054 C8orf59Q8N0T1 100 aaPredicted RBP-0.82□□□□□ -2.54
LRCH3-211ENST00000466054 GVINP1Q7Z2Y8 2422 aa-0.82□□□□□ -2.54
LRCH3-211ENST00000466054 ITPR1Q14643 2758 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 MYOM1P52179 1685 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 MIF4GDA9UHW6 222 aaKnown RBP-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 SSSCA1O60232 199 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 FGF7P21781 194 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 SPRR1BP22528 89 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 DEFB123Q8N688 67 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 TSLPQ969D9 159 aa-0.83□□□□□ -2.54
LRCH3-211ENST00000466054 MBD5Q9P267 1494 aa-0.84□□□□□ -2.54
LRCH3-211ENST00000466054 APOC2P02655 101 aa-0.84□□□□□ -2.54
LRCH3-211ENST00000466054 COMMD6Q7Z4G1 85 aa-0.84□□□□□ -2.54
LRCH3-211ENST00000466054 RELNP78509 3460 aa-0.84□□□□□ -2.54
LRCH3-211ENST00000466054 SFT2D2O95562 160 aa-0.85□□□□□ -2.55
LRCH3-211ENST00000466054 CATR1Q13166 79 aa-0.85□□□□□ -2.55
LRCH3-211ENST00000466054 C5orf38Q86SI9 138 aa-0.85□□□□□ -2.55
LRCH3-211ENST00000466054 SPG11Q96JI7 2443 aa-0.85□□□□□ -2.55
LRCH3-211ENST00000466054 KALRNO60229 2985 aa-0.85□□□□□ -2.55
LRCH3-211ENST00000466054 IFNGP01579 166 aa-0.86□□□□□ -2.55
LRCH3-211ENST00000466054 S100A12P80511 92 aa-0.86□□□□□ -2.55
LRCH3-211ENST00000466054 SHROOM2Q13796 1616 aa-0.86□□□□□ -2.55
LRCH3-211ENST00000466054 NBEAQ8NFP9 2946 aa-0.86□□□□□ -2.55
LRCH3-211ENST00000466054 MT1AP04731 61 aa-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 MGPP08493 103 aa-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 DEFA5Q01523 94 aa-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 MRPL54Q6P161 138 aaKnown RBP-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 RIF1Q5UIP0 2472 aaKnown RBP-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 GOLGA4Q13439 2230 aaKnown RBP-0.87□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms