RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 IGHV1-58A0A0C4DH39 117 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 TRGC2P03986 189 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 LINC00242Q5T6M2 205 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 SCGB3A1Q96QR1 104 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 AMELXQ99217 191 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 VCX2Q9H322 139 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 RYR1P21817 5038 aa7.52□□□□□ -1.21
CUX1-207ENST00000465461 A0A096LNJ9 63 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 IGHV3OR16-9A0A0B4J2B5 98 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 COLCA2A8K830 154 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 PANO1I0J062 215 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 LINC00614P0C842 121 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 UBE2D1P51668 147 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 CNBPP62633 177 aaKnown RBP7.51□□□□□ -1.21
CUX1-207ENST00000465461 Q6ZN92 141 aa7.51□□□□□ -1.21
CUX1-207ENST00000465461 IGLV4-69A0A075B6H9 119 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 G0S2P27469 103 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 SDIM1Q6ZPB5 146 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 Q6ZSA8 131 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 ERASQ7Z444 233 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 TIMM17AQ99595 171 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 C2orf88Q9BSF0 95 aa7.5□□□□□ -1.21
CUX1-207ENST00000465461 HSPG2P98160 4391 aa7.49□□□□□ -1.21
CUX1-207ENST00000465461 ZNF561-AS1K7EIQ3 104 aa7.49□□□□□ -1.21
CUX1-207ENST00000465461 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.49□□□□□ -1.21
CUX1-207ENST00000465461 IGHV3-64A0A075B6Q5 118 aa7.48□□□□□ -1.21
CUX1-207ENST00000465461 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.48□□□□□ -1.21
CUX1-207ENST00000465461 CHTF8P0CG12 524 aa7.48□□□□□ -1.21
CUX1-207ENST00000465461 SCXQ7RTU7 201 aa7.48□□□□□ -1.21
CUX1-207ENST00000465461 Q8N1X5 172 aa7.48□□□□□ -1.21
CUX1-207ENST00000465461 ORAOV1Q8WV07 137 aa7.48□□□□□ -1.21
CUX1-207ENST00000465461 A0A0J9YXV3 536 aa7.47□□□□□ -1.21
CUX1-207ENST00000465461 APOMO95445 188 aa7.47□□□□□ -1.21
CUX1-207ENST00000465461 NPSP0C0P6 89 aa7.47□□□□□ -1.21
CUX1-207ENST00000465461 SPAG11BQ08648 103 aa7.47□□□□□ -1.21
CUX1-207ENST00000465461 Q6ZRU5 148 aa7.47□□□□□ -1.21
CUX1-207ENST00000465461 CIRBP-AS1Q8TBR5 109 aa7.47□□□□□ -1.21
CUX1-207ENST00000465461 A0A087WZ39 114 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 HBDP02042 147 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 NDUFA6P56556 154 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 RAB5BP61020 215 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 SYCNQ0VAF6 134 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 PAPPA-AS1Q5QFB9 102 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 CARD19Q96LW7 228 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 CAMK2N2Q96S95 79 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 CHAC1Q9BUX1 264 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 CST9LQ9H4G1 147 aa7.46□□□□□ -1.22
CUX1-207ENST00000465461 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.45□□□□□ -1.22
CUX1-207ENST00000465461 PDZD11Q5EBL8 140 aa7.45□□□□□ -1.22
CUX1-207ENST00000465461 BAGE3Q86Y29 109 aa7.45□□□□□ -1.22
CUX1-207ENST00000465461 DNAH8Q96JB1 4490 aa7.45□□□□□ -1.22
CUX1-207ENST00000465461 IGKV2-24A0A0C4DH68 120 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 ATP6V1G1O75348 118 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 SMCPP49901 116 aaPredicted RBP7.44□□□□□ -1.22
CUX1-207ENST00000465461 PMVKQ15126 192 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 C10orf25Q5T742 122 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 FAM19A3Q7Z5A8 133 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 FAM19A2Q8N3H0 131 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 OR10D4PQ8NGN7 298 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 CHCHD1Q96BP2 118 aaKnown RBP7.44□□□□□ -1.22
CUX1-207ENST00000465461 DPH3Q96FX2 82 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 GEMIN7Q9H840 131 aaKnown RBP7.44□□□□□ -1.22
CUX1-207ENST00000465461 CDKN2A-AS1Q9UH64 79 aa7.44□□□□□ -1.22
CUX1-207ENST00000465461 A0A096LNI7 61 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 LINC01549A6NIU2 74 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 EPM2AB3EWF7 344 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 NUPR1O60356 82 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 LINC00310P59036 64 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 KIAA0087Q14695 138 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 Q5VSD8 79 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 UNQ6190/PRO20217Q6UXQ8 127 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 C2orf48Q96LS8 159 aa7.43□□□□□ -1.22
CUX1-207ENST00000465461 SERF1AO75920 110 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 HERVK_113P63121 156 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 MAJINQ3KP22 176 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 C2orf82Q6UX34 121 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 LINC00469Q8N7U9 141 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 SPACA4Q8TDM5 124 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 TOMM7Q9P0U1 55 aa7.42□□□□□ -1.22
CUX1-207ENST00000465461 A0A087WYN8 130 aa7.41□□□□□ -1.22
CUX1-207ENST00000465461 TINCRA0A1B0GVN0 87 aa7.41□□□□□ -1.22
CUX1-207ENST00000465461 HSBP1O75506 76 aa7.41□□□□□ -1.22
CUX1-207ENST00000465461 SEC11AP67812 179 aa7.41□□□□□ -1.22
CUX1-207ENST00000465461 LINC00528Q8N1L1 170 aa7.41□□□□□ -1.22
CUX1-207ENST00000465461 ATP5LO75964 103 aa7.4□□□□□ -1.22
CUX1-207ENST00000465461 SPINK8P0C7L1 97 aa7.4□□□□□ -1.22
CUX1-207ENST00000465461 GAGE2BQ13066 116 aa7.4□□□□□ -1.22
CUX1-207ENST00000465461 CIRBPQ14011 172 aaKnown RBP7.4□□□□□ -1.22
CUX1-207ENST00000465461 LINC01561Q8N1V8 128 aa7.4□□□□□ -1.22
CUX1-207ENST00000465461 PACRGQ96M98 296 aaPredicted RBP7.4□□□□□ -1.22
CUX1-207ENST00000465461 C6orf48Q9UBA6 75 aa7.4□□□□□ -1.22
CUX1-207ENST00000465461 FAM229AH3BQW9 127 aa7.39□□□□□ -1.23
CUX1-207ENST00000465461 NDUFA1O15239 70 aa7.39□□□□□ -1.23
CUX1-207ENST00000465461 S100A1P23297 94 aa7.39□□□□□ -1.23
CUX1-207ENST00000465461 IFI27L1Q96BM0 104 aa7.39□□□□□ -1.23
CUX1-207ENST00000465461 IGLV5-45A0A087WSX0 123 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 LOC107984640A0A0U1RRK4 108 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 SMIM1B2RUZ4 78 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BKO60814 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BJP06899 126 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms