RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 IGLV5-52A0A0A0MRZ9 124 aa8.26□□□□□ -1.09
HDAC4-207ENST00000461113 COLCA2A8K830 154 aa8.26□□□□□ -1.09
HDAC4-207ENST00000461113 USP17L23D6RBM5 183 aa8.26□□□□□ -1.09
HDAC4-207ENST00000461113 CD164L2Q6UWJ8 174 aa8.26□□□□□ -1.09
HDAC4-207ENST00000461113 TOMM6Q96B49 74 aa8.26□□□□□ -1.09
HDAC4-207ENST00000461113 LINC01546A6NGU7 62 aa8.25□□□□□ -1.09
HDAC4-207ENST00000461113 SCO1O75880 301 aa8.25□□□□□ -1.09
HDAC4-207ENST00000461113 MALP21145 153 aa8.25□□□□□ -1.09
HDAC4-207ENST00000461113 ERASQ7Z444 233 aa8.25□□□□□ -1.09
HDAC4-207ENST00000461113 TIMM17AQ99595 171 aa8.25□□□□□ -1.09
HDAC4-207ENST00000461113 IGLV4-3A0A075B6K6 122 aa8.24□□□□□ -1.09
HDAC4-207ENST00000461113 CHCHD1Q96BP2 118 aaKnown RBP8.24□□□□□ -1.09
HDAC4-207ENST00000461113 OPRPNQ99935 248 aaPredicted RBP8.24□□□□□ -1.09
HDAC4-207ENST00000461113 RNF213Q63HN8 5207 aa8.24□□□□□ -1.09
HDAC4-207ENST00000461113 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.23□□□□□ -1.09
HDAC4-207ENST00000461113 hDV102S1A0JD36 115 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 IGIPA6NJ69 53 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.23□□□□□ -1.09
HDAC4-207ENST00000461113 COX7A2LO14548 114 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 LCE2BO14633 110 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 ATP6V1G1O75348 118 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 APOMO95445 188 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 HBDP02042 147 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 SEC11AP67812 179 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 KRTAP26-1Q6PEX3 210 aa8.23□□□□□ -1.09
HDAC4-207ENST00000461113 IGHV1-58A0A0C4DH39 117 aa8.22□□□□□ -1.09
HDAC4-207ENST00000461113 HSBP1O75506 76 aa8.22□□□□□ -1.09
HDAC4-207ENST00000461113 FOXI1Q12951 378 aa8.22□□□□□ -1.09
HDAC4-207ENST00000461113 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.21□□□□□ -1.1
HDAC4-207ENST00000461113 ATP5LO75964 103 aa8.21□□□□□ -1.1
HDAC4-207ENST00000461113 GCSHP23434 173 aa8.21□□□□□ -1.1
HDAC4-207ENST00000461113 WFDC2Q14508 124 aa8.21□□□□□ -1.1
HDAC4-207ENST00000461113 ZNF561-AS1K7EIQ3 104 aa8.2□□□□□ -1.1
HDAC4-207ENST00000461113 NDUFA6P56556 154 aa8.2□□□□□ -1.1
HDAC4-207ENST00000461113 AMELXQ99217 191 aa8.2□□□□□ -1.1
HDAC4-207ENST00000461113 GEMIN7Q9H840 131 aaKnown RBP8.2□□□□□ -1.1
HDAC4-207ENST00000461113 PMVKQ15126 192 aa8.19□□□□□ -1.1
HDAC4-207ENST00000461113 C5orf38Q86SI9 138 aa8.19□□□□□ -1.1
HDAC4-207ENST00000461113 PRSS1P07477 247 aa8.18□□□□□ -1.1
HDAC4-207ENST00000461113 UBE2D1P51668 147 aa8.18□□□□□ -1.1
HDAC4-207ENST00000461113 HERVK_113P63121 156 aa8.18□□□□□ -1.1
HDAC4-207ENST00000461113 PMCHL1Q16048 86 aa8.18□□□□□ -1.1
HDAC4-207ENST00000461113 LRP1Q07954 4544 aaKnown RBP8.17□□□□□ -1.1
HDAC4-207ENST00000461113 HIGD2BQ4VC39 106 aa8.17□□□□□ -1.1
HDAC4-207ENST00000461113 LINC00242Q5T6M2 205 aa8.17□□□□□ -1.1
HDAC4-207ENST00000461113 FAM104AQ969W3 186 aa8.17□□□□□ -1.1
HDAC4-207ENST00000461113 URB1-AS1Q96HZ7 61 aa8.17□□□□□ -1.1
HDAC4-207ENST00000461113 PACRGQ96M98 296 aaPredicted RBP8.17□□□□□ -1.1
HDAC4-207ENST00000461113 PKIGQ9Y2B9 76 aa8.17□□□□□ -1.1
HDAC4-207ENST00000461113 GVQW2A0A096LPI5 108 aaPredicted RBP8.16□□□□□ -1.1
HDAC4-207ENST00000461113 PLA2G1BP04054 148 aaKnown RBP8.16□□□□□ -1.1
HDAC4-207ENST00000461113 ZC2HC1BQ5TFG8 222 aa8.16□□□□□ -1.1
HDAC4-207ENST00000461113 C15orf56Q8N910 161 aa8.16□□□□□ -1.1
HDAC4-207ENST00000461113 CST9LQ9H4G1 147 aa8.16□□□□□ -1.1
HDAC4-207ENST00000461113 IGHV3OR16-9A0A0B4J2B5 98 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 SERF1AO75920 110 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 CNBPP62633 177 aaKnown RBP8.15□□□□□ -1.1
HDAC4-207ENST00000461113 PDZD11Q5EBL8 140 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 LINC00173Q6ZV60 143 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 LINC01561Q8N1V8 128 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 OR10D4PQ8NGN7 298 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 HSPB8Q9UJY1 196 aa8.15□□□□□ -1.1
HDAC4-207ENST00000461113 IGHV3-64A0A075B6Q5 118 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 A0A087WZ39 114 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 PRSS2P07478 247 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 SPAG11BQ08648 103 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 LINC00469Q8N7U9 141 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 ORAOV1Q8WV07 137 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 IFI27L1Q96BM0 104 aa8.14□□□□□ -1.11
HDAC4-207ENST00000461113 A0A096LNJ9 63 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 A0A0J9YXV3 536 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 TINCRA0A1B0GVN0 87 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 F8WDY8 70 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 H3BRM9 83 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 LEPROTL1O95214 131 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 FAM19A3Q7Z5A8 133 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 FAM19A2Q8N3H0 131 aa8.13□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BKO60814 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BJP06899 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BOP23527 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BBP33778 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BDP58876 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BCP62807 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 COX6A2Q02221 97 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 SYCNQ0VAF6 134 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST2H2BEQ16778 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.12□□□□□ -1.11
HDAC4-207ENST00000461113 C9orf163Q8N9P6 203 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BHQ93079 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 C2orf48Q96LS8 159 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 CARD19Q96LW7 228 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 CAMK2N2Q96S95 79 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BNQ99877 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 HIST1H2BMQ99879 126 aa8.12□□□□□ -1.11
HDAC4-207ENST00000461113 IGLV4-69A0A075B6H9 119 aa8.11□□□□□ -1.11
HDAC4-207ENST00000461113 OXTP01178 125 aa8.11□□□□□ -1.11
HDAC4-207ENST00000461113 DPH3Q96FX2 82 aa8.11□□□□□ -1.11
HDAC4-207ENST00000461113 NDUFA1O15239 70 aa8.1□□□□□ -1.11
HDAC4-207ENST00000461113 LINC00528Q8N1L1 170 aa8.1□□□□□ -1.11
HDAC4-207ENST00000461113 FAM30AQ9NZY2 134 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms