RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 PDZD11Q5EBL8 140 aa10.41□□□□□ -0.74
USP39-205ENST00000442708 Q6ZN92 141 aa10.41□□□□□ -0.74
USP39-205ENST00000442708 C5orf38Q86SI9 138 aa10.41□□□□□ -0.74
USP39-205ENST00000442708 IGHV3OR16-9A0A0B4J2B5 98 aa10.4□□□□□ -0.74
USP39-205ENST00000442708 COX7A2LO14548 114 aa10.4□□□□□ -0.74
USP39-205ENST00000442708 GVQW2A0A096LPI5 108 aaPredicted RBP10.39□□□□□ -0.75
USP39-205ENST00000442708 HBDP02042 147 aa10.39□□□□□ -0.75
USP39-205ENST00000442708 CFAP161Q6P656 301 aa10.39□□□□□ -0.75
USP39-205ENST00000442708 CHCHD1Q96BP2 118 aaKnown RBP10.39□□□□□ -0.75
USP39-205ENST00000442708 LINC00526Q96FQ7 95 aa10.39□□□□□ -0.75
USP39-205ENST00000442708 C2orf88Q9BSF0 95 aa10.39□□□□□ -0.75
USP39-205ENST00000442708 IGHV1-58A0A0C4DH39 117 aa10.38□□□□□ -0.75
USP39-205ENST00000442708 LINC01549A6NIU2 74 aa10.38□□□□□ -0.75
USP39-205ENST00000442708 NUPR1O60356 82 aa10.38□□□□□ -0.75
USP39-205ENST00000442708 BAGE3Q86Y29 109 aa10.38□□□□□ -0.75
USP39-205ENST00000442708 SERF1AO75920 110 aa10.37□□□□□ -0.75
USP39-205ENST00000442708 CNBPP62633 177 aaKnown RBP10.37□□□□□ -0.75
USP39-205ENST00000442708 PAPPA-AS1Q5QFB9 102 aa10.37□□□□□ -0.75
USP39-205ENST00000442708 FAM19A3Q7Z5A8 133 aa10.37□□□□□ -0.75
USP39-205ENST00000442708 CST9LQ9H4G1 147 aa10.37□□□□□ -0.75
USP39-205ENST00000442708 FAM30AQ9NZY2 134 aa10.37□□□□□ -0.75
USP39-205ENST00000442708 A0A0J9YXV3 536 aa10.36□□□□□ -0.75
USP39-205ENST00000442708 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.36□□□□□ -0.75
USP39-205ENST00000442708 MALP21145 153 aa10.36□□□□□ -0.75
USP39-205ENST00000442708 FAM19A2Q8N3H0 131 aa10.36□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BKO60814 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BJP06899 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BOP23527 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BBP33778 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BDP58876 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BCP62807 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST2H2BEQ16778 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.35□□□□□ -0.75
USP39-205ENST00000442708 C9orf163Q8N9P6 203 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BHQ93079 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BNQ99877 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 HIST1H2BMQ99879 126 aa10.35□□□□□ -0.75
USP39-205ENST00000442708 APOBP04114 4563 aaKnown RBP10.35□□□□□ -0.75
USP39-205ENST00000442708 A0A087WZ39 114 aa10.34□□□□□ -0.75
USP39-205ENST00000442708 PMVKQ15126 192 aa10.34□□□□□ -0.75
USP39-205ENST00000442708 IGLV4-69A0A075B6H9 119 aa10.33□□□□□ -0.76
USP39-205ENST00000442708 IGHV3-64A0A075B6Q5 118 aa10.33□□□□□ -0.76
USP39-205ENST00000442708 HSBP1O75506 76 aa10.33□□□□□ -0.76
USP39-205ENST00000442708 CDK2AP2O75956 126 aa10.33□□□□□ -0.76
USP39-205ENST00000442708 XGP55808 180 aa10.33□□□□□ -0.76
USP39-205ENST00000442708 HAMPP81172 84 aa10.33□□□□□ -0.76
USP39-205ENST00000442708 ATP5LO75964 103 aa10.32□□□□□ -0.76
USP39-205ENST00000442708 Q6ZSA8 131 aa10.32□□□□□ -0.76
USP39-205ENST00000442708 CDKN2A-AS1Q9UH64 79 aa10.32□□□□□ -0.76
USP39-205ENST00000442708 NDUFA6P56556 154 aa10.31□□□□□ -0.76
USP39-205ENST00000442708 SDIM1Q6ZPB5 146 aa10.31□□□□□ -0.76
USP39-205ENST00000442708 ORAOV1Q8WV07 137 aa10.31□□□□□ -0.76
USP39-205ENST00000442708 DNAH8Q96JB1 4490 aa10.31□□□□□ -0.76
USP39-205ENST00000442708 TINCRA0A1B0GVN0 87 aa10.3□□□□□ -0.76
USP39-205ENST00000442708 ZNF561-AS1K7EIQ3 104 aa10.3□□□□□ -0.76
USP39-205ENST00000442708 APOMO95445 188 aa10.3□□□□□ -0.76
USP39-205ENST00000442708 HERVK_113P63121 156 aa10.3□□□□□ -0.76
USP39-205ENST00000442708 SPAG11BQ08648 103 aa10.3□□□□□ -0.76
USP39-205ENST00000442708 OR10D4PQ8NGN7 298 aa10.3□□□□□ -0.76
USP39-205ENST00000442708 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.29□□□□□ -0.76
USP39-205ENST00000442708 PANO1I0J062 215 aa10.29□□□□□ -0.76
USP39-205ENST00000442708 SEC11AP67812 179 aa10.29□□□□□ -0.76
USP39-205ENST00000442708 KIAA0087Q14695 138 aa10.29□□□□□ -0.76
USP39-205ENST00000442708 Q6ZRU5 148 aa10.29□□□□□ -0.76
USP39-205ENST00000442708 LINC01561Q8N1V8 128 aa10.29□□□□□ -0.76
USP39-205ENST00000442708 IFI27L1Q96BM0 104 aa10.29□□□□□ -0.76
USP39-205ENST00000442708 GEMIN7Q9H840 131 aaKnown RBP10.29□□□□□ -0.76
USP39-205ENST00000442708 HSPG2P98160 4391 aa10.28□□□□□ -0.76
USP39-205ENST00000442708 IGLV5-45A0A087WSX0 123 aa10.28□□□□□ -0.76
USP39-205ENST00000442708 IGLC3P0DOY3 106 aa10.28□□□□□ -0.76
USP39-205ENST00000442708 SYCNQ0VAF6 134 aa10.28□□□□□ -0.76
USP39-205ENST00000442708 LINC00469Q8N7U9 141 aa10.28□□□□□ -0.76
USP39-205ENST00000442708 CARD19Q96LW7 228 aa10.28□□□□□ -0.76
USP39-205ENST00000442708 C2orf48Q96LS8 159 aa10.27□□□□□ -0.77
USP39-205ENST00000442708 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.27□□□□□ -0.77
USP39-205ENST00000442708 C10orf25Q5T742 122 aa10.26□□□□□ -0.77
USP39-205ENST00000442708 CAMK2N2Q96S95 79 aa10.26□□□□□ -0.77
USP39-205ENST00000442708 SMIM1B2RUZ4 78 aa10.25□□□□□ -0.77
USP39-205ENST00000442708 CHTF8P0CG12 524 aa10.25□□□□□ -0.77
USP39-205ENST00000442708 FABP4P15090 132 aa10.25□□□□□ -0.77
USP39-205ENST00000442708 ZNF22P17026 224 aaPredicted RBP10.25□□□□□ -0.77
USP39-205ENST00000442708 UNQ6190/PRO20217Q6UXQ8 127 aa10.25□□□□□ -0.77
USP39-205ENST00000442708 CHAC1Q9BUX1 264 aa10.25□□□□□ -0.77
USP39-205ENST00000442708 KRTAP4-5Q9BYR2 181 aa10.25□□□□□ -0.77
USP39-205ENST00000442708 TRAV12-1A0A0B4J245 112 aa10.24□□□□□ -0.77
USP39-205ENST00000442708 C11orf86A6NJI1 115 aa10.24□□□□□ -0.77
USP39-205ENST00000442708 LEPROTL1O95214 131 aa10.24□□□□□ -0.77
USP39-205ENST00000442708 C2orf82Q6UX34 121 aa10.24□□□□□ -0.77
USP39-205ENST00000442708 SPINK8P0C7L1 97 aa10.23□□□□□ -0.77
USP39-205ENST00000442708 COA6Q5JTJ3 125 aaKnown RBP10.23□□□□□ -0.77
USP39-205ENST00000442708 SCXQ7RTU7 201 aa10.23□□□□□ -0.77
USP39-205ENST00000442708 TOMM7Q9P0U1 55 aa10.23□□□□□ -0.77
USP39-205ENST00000442708 CHTOPQ9Y3Y2 248 aaKnown RBP10.23□□□□□ -0.77
USP39-205ENST00000442708 CIRBPQ14011 172 aaKnown RBP10.22□□□□□ -0.77
USP39-205ENST00000442708 PACRGQ96M98 296 aaPredicted RBP10.22□□□□□ -0.77
USP39-205ENST00000442708 MRPL35Q9NZE8 188 aaKnown RBP10.22□□□□□ -0.77
USP39-205ENST00000442708 A0A096LNI7 61 aa10.21□□□□□ -0.77
USP39-205ENST00000442708 F8WDY8 70 aa10.21□□□□□ -0.77
USP39-205ENST00000442708 H0Y8G0 127 aa10.21□□□□□ -0.77
USP39-205ENST00000442708 NDUFA1O15239 70 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms