RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 IGKV3D-15A0A087WSY6 115 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 H3BPC8 53 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 K7EQD1 137 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 NDUFA4O00483 81 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 IGHV3-53P01767 116 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 SEC61BP60468 96 aaKnown RBP4.39□□□□□ -1.71
MCF2-205ENST00000437564 REG3AQ06141 175 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 C10orf55Q5SWW7 151 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 WFDC10AQ9H1F0 79 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 Q9Y3F1 56 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 MALRD1Q5VYJ5 2156 aa4.39□□□□□ -1.71
MCF2-205ENST00000437564 TRGV2A0A075B6R0 118 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 IGHV1-3A0A0C4DH29 117 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 IGHV1-8P0DP01 117 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 ROMO1P60602 79 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 M0QY20 66 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 CDK2AP2O75956 126 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 Q8NAQ8 132 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 FAM104AQ969W3 186 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 CDKN2A-AS1Q9UH64 79 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 CADP27708 2225 aa4.38□□□□□ -1.71
MCF2-205ENST00000437564 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.37□□□□□ -1.71
MCF2-205ENST00000437564 TRBV6-4A0A1B0GX49 114 aa4.37□□□□□ -1.71
MCF2-205ENST00000437564 MUC7Q8TAX7 377 aa4.37□□□□□ -1.71
MCF2-205ENST00000437564 COX7B2Q8TF08 81 aa4.37□□□□□ -1.71
MCF2-205ENST00000437564 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.37□□□□□ -1.71
MCF2-205ENST00000437564 IGLV4-60A0A075B6I1 120 aa4.36□□□□□ -1.71
MCF2-205ENST00000437564 IGHV3-21A0A0B4J1V1 117 aa4.36□□□□□ -1.71
MCF2-205ENST00000437564 PRAC2D3DTV9 90 aa4.36□□□□□ -1.71
MCF2-205ENST00000437564 K7EIM0 57 aa4.36□□□□□ -1.71
MCF2-205ENST00000437564 MRPL33O75394 65 aaKnown RBP4.36□□□□□ -1.71
MCF2-205ENST00000437564 MRGPRG-AS1Q2M3A8 158 aa4.36□□□□□ -1.71
MCF2-205ENST00000437564 IGKV3-15P01624 115 aa4.36□□□□□ -1.71
MCF2-205ENST00000437564 RNASE3P12724 160 aaKnown RBP4.36□□□□□ -1.71
MCF2-205ENST00000437564 RP1P56715 2156 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 IGHV3OR16-8A0A075B7F1 116 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 SRRM5B3KS81 715 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 SLURP1P55000 103 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 KCNQ1DNQ9H478 68 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 SVILO95425 2214 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 F5P12259 2224 aa4.35□□□□□ -1.71
MCF2-205ENST00000437564 A0A1W2PNM2 257 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 SMIM1B2RUZ4 78 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 IGHV4-38-2P0DP08 117 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 ADM2Q7Z4H4 148 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 GAFA1Q96PS6 74 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 LY6G6EA0A0G2JKS1 128 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 KRTAP16-1A8MUX0 517 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 CCL3P10147 92 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 COX7BP24311 80 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 CCL18P55774 89 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 SPAG11BQ08648 103 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 LINC01006Q8NI28 216 aa4.34□□□□□ -1.71
MCF2-205ENST00000437564 COL27A1Q8IZC6 1860 aaPredicted RBP4.34□□□□□ -1.72
MCF2-205ENST00000437564 CNTRLQ7Z7A1 2325 aa4.34□□□□□ -1.72
MCF2-205ENST00000437564 IGHV3-35A0A0C4DH35 117 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 SPAG11AQ6PDA7 123 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 RNF5Q99942 180 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 LINC00575Q6W349 94 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 Q6ZSN1 163 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 SMIM29Q86T20 159 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 ZFAND2AQ8N6M9 145 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 CNEP1R1Q8N9A8 125 aa4.33□□□□□ -1.72
MCF2-205ENST00000437564 KIAA0100Q14667 2235 aaKnown RBP4.32□□□□□ -1.72
MCF2-205ENST00000437564 CLPSL1A2RUU4 121 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 M0R2N4 97 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 IGHV4-59P01825 116 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 SPINK7P58062 85 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 PRR4Q16378 134 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 HIGD2BQ4VC39 106 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 CSAG1Q6PB30 78 aa4.32□□□□□ -1.72
MCF2-205ENST00000437564 IGHV7-81A0A0B4J1V7 117 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 H0Y9P7 68 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 ZFP36P26651 326 aaKnown RBP4.31□□□□□ -1.72
MCF2-205ENST00000437564 TTTY12Q9BZ98 90 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 CCL26Q9Y258 94 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 NAV3Q8IVL0 2385 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 ATP6V0E1O15342 81 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 IGLV1-47P01700 117 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 LINC00158P58513 81 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 PRR9Q5T870 116 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 COA5Q86WW8 74 aa4.31□□□□□ -1.72
MCF2-205ENST00000437564 KPRPQ5T749 579 aaPredicted RBP4.3□□□□□ -1.72
MCF2-205ENST00000437564 LINC00612Q8N6U2 182 aa4.3□□□□□ -1.72
MCF2-205ENST00000437564 DEC1Q9P2X7 70 aa4.3□□□□□ -1.72
MCF2-205ENST00000437564 A0A096LNT2 108 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 IGHV3-66A0A0C4DH42 116 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 PRB1P04280 392 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 PRB3Q04118 309 aaPredicted RBP4.29□□□□□ -1.72
MCF2-205ENST00000437564 MIR22HGQ0VDD5 57 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 Q6ZR54 194 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 CHCHD7Q9BUK0 85 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 IGLV11-55A0A075B6I3 123 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 KRTAP23-1A1A580 65 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 TFF2Q03403 129 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 ODF3L2Q3SX64 289 aa4.29□□□□□ -1.72
MCF2-205ENST00000437564 IGHV3OR16-12A0A075B7B8 117 aa4.28□□□□□ -1.72
MCF2-205ENST00000437564 IGHV3-64DA0A0J9YX35 117 aa4.28□□□□□ -1.72
MCF2-205ENST00000437564 SEC16AO15027 2179 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms