RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 SPANXA1Q9NS26 97 aa6.03□□□□□ -1.44
HDAC1-202ENST00000428704 MRPL16Q9NX20 251 aaKnown RBP6.03□□□□□ -1.44
HDAC1-202ENST00000428704 VPS13BQ7Z7G8 4022 aa6.03□□□□□ -1.44
HDAC1-202ENST00000428704 IGLV4-3A0A075B6K6 122 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 TRBV7-3A0A075B6L6 115 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 DEFB131BA0A096LNP1 70 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 MYMXA0A1B0GTQ4 84 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 A6NDN8 102 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 H3BRM9 83 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 SPART-AS1P0CW21 52 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 HERVK_113P61574 105 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 RRN3P1Q2M238 152 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 UBE2DNLQ8IWF7 75 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 FAM104AQ969W3 186 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 VCX2Q9H322 139 aa6.02□□□□□ -1.45
HDAC1-202ENST00000428704 TRGV1A0A0A0MS02 117 aa6.01□□□□□ -1.45
HDAC1-202ENST00000428704 IGHV3-73A0A0B4J1V6 119 aa6.01□□□□□ -1.45
HDAC1-202ENST00000428704 TRBV6-4A0A1B0GX49 114 aa6.01□□□□□ -1.45
HDAC1-202ENST00000428704 MRPS36P82909 103 aaKnown RBP6.01□□□□□ -1.45
HDAC1-202ENST00000428704 COTL1Q14019 142 aa6.01□□□□□ -1.45
HDAC1-202ENST00000428704 DAZ4Q86SG3 579 aaKnown RBP6.01□□□□□ -1.45
HDAC1-202ENST00000428704 LINC00612Q8N6U2 182 aa6.01□□□□□ -1.45
HDAC1-202ENST00000428704 CHAC1Q9BUX1 264 aa6.01□□□□□ -1.45
HDAC1-202ENST00000428704 DAZ3Q9NR90 486 aaKnown RBP6.01□□□□□ -1.45
HDAC1-202ENST00000428704 CSDC2Q9Y534 153 aaKnown RBP6.01□□□□□ -1.45
HDAC1-202ENST00000428704 TRAV8-6A0A0B4J262 113 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 RPL36AP83881 106 aaKnown RBP6□□□□□ -1.45
HDAC1-202ENST00000428704 Q6ZTI0 123 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 ZNRF2Q8NHG8 242 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 RPL36ALQ969Q0 106 aaKnown RBP6□□□□□ -1.45
HDAC1-202ENST00000428704 ZNF479Q96JC4 524 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 PRADC1Q9BSG0 188 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 TTTY13Q9BZ97 58 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 GTSF1LQ9H1H1 148 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 UBE2D4Q9Y2X8 147 aa6□□□□□ -1.45
HDAC1-202ENST00000428704 FLG2Q5D862 2391 aaPredicted RBP6□□□□□ -1.45
HDAC1-202ENST00000428704 TEX48A0A1B0GUV7 120 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 TMEM223A0PJW6 202 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 K7EQD1 137 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 UBE2D3P61077 147 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 UBE2D2P62837 147 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 SMAGPQ0VAQ4 97 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 UBE2V1Q13404 147 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 Q5VSD8 79 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 FAM19A3Q7Z5A8 133 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 CEND1Q8N111 149 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 NOP10Q9NPE3 64 aaKnown RBP5.99□□□□□ -1.45
HDAC1-202ENST00000428704 Q9UF83 564 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 RNF213Q63HN8 5207 aa5.99□□□□□ -1.45
HDAC1-202ENST00000428704 NACAE9PAV3 2078 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 LYRM9A8MSI8 78 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 H7C423 109 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 LEPROTO15243 131 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 TIRAPP58753 221 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 DAD1P61803 113 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 LCE4AQ5TA78 99 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 SERTAD4-AS1Q5TG53 156 aa5.98□□□□□ -1.45
HDAC1-202ENST00000428704 OPRPNQ99935 248 aaPredicted RBP5.98□□□□□ -1.45
HDAC1-202ENST00000428704 SPANXB1Q9NS25 103 aaPredicted RBP5.98□□□□□ -1.45
HDAC1-202ENST00000428704 TINCRA0A1B0GVN0 87 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 A0A1B0GWB2 263 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 SMIM13P0DJ93 91 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 HTN3P15516 51 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 ZNF22P17026 224 aaPredicted RBP5.97□□□□□ -1.45
HDAC1-202ENST00000428704 TMEM170BQ5T4T1 132 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 SLC25A29Q8N8R3 303 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 DEFB104AQ8WTQ1 72 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 PLEKHB2Q96CS7 222 aa5.97□□□□□ -1.45
HDAC1-202ENST00000428704 IGLV5-45A0A087WSX0 123 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 A0A0J9YXV3 536 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 GAGE12BA1L429 117 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 ZNF815PA8K554 130 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 J3QQQ9 107 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 GAGE7O76087 117 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 GAGE12FP0CL80 117 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 GAGE12GP0CL81 117 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 GAGE12IP0CL82 117 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 DEFB130BP0DP73 79 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 DEFB130AP0DP74 79 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 GCSHP23434 173 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 FXYD2P54710 66 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 FHL2Q14192 279 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 OR5A1Q8NGJ0 315 aa5.96□□□□□ -1.46
HDAC1-202ENST00000428704 TRGV2A0A075B6R0 118 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 A0A0J9YY99 117 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 CCL25O15444 150 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 LINC00694P0DN24 101 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 UBE2D1P51668 147 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 PTTG1IPP53801 180 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 NTM-AS1Q6ZSK4 140 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 Q6ZVH6 145 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 HIST1H4GQ99525 98 aa5.95□□□□□ -1.46
HDAC1-202ENST00000428704 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.94□□□□□ -1.46
HDAC1-202ENST00000428704 IGHV3-38A0A0C4DH36 116 aa5.94□□□□□ -1.46
HDAC1-202ENST00000428704 IGHV1-58A0A0C4DH39 117 aa5.94□□□□□ -1.46
HDAC1-202ENST00000428704 KRTAP4-8A0A0G2JLE6 195 aa5.94□□□□□ -1.46
HDAC1-202ENST00000428704 IGKV2-29A2NJV5 120 aaPredicted RBP5.94□□□□□ -1.46
HDAC1-202ENST00000428704 LGALS3P17931 250 aaKnown RBP5.94□□□□□ -1.46
HDAC1-202ENST00000428704 VAMP3Q15836 100 aa5.94□□□□□ -1.46
HDAC1-202ENST00000428704 DGAT2L7PQ6IED9 249 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms