RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 IGHV3-43A0A0B4J1X8 118 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 TRBV7-4A0A0J9YYF1 115 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 hDV103S1A0JD37 113 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 TMEM256-PLSCR3K7ERE1 68 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 M0R3E3 92 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 NDUFB3O43676 98 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 IGHV3-43DP0DP04 118 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 SUB1P53999 127 aaKnown RBP eCLIP1.79□□□□□ -2.12
LINC01040-201ENST00000425048 BLCAPP62952 87 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 MIAQ16674 131 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 RPL39P5Q59GN2 51 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 HCP5Q6MZN7 132 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 ZNF826PQ6ZT77 177 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 CAMK2N1Q7Z7J9 78 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 NPBQ8NG41 125 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 NDUFA4L2Q9NRX3 87 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 SDK2Q58EX2 2172 aa1.79□□□□□ -2.12
LINC01040-201ENST00000425048 TRANK1O15050 2925 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 USP24Q9UPU5 2620 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 MUC4Q99102 2169 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 TRAV10A0A0B4J240 114 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 TRAV12-3A0A0B4J271 114 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 IGHV7-4-1A0A0J9YVY3 117 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 DEFB108AA8MXU0 73 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 M0R381 172 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 ERC2-IT1O76042 136 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 DNAL4O96015 105 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 CTSGP08311 255 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 CHTF8P0CG12 524 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 PRB4P10163 310 aaPredicted RBP1.78□□□□□ -2.12
LINC01040-201ENST00000425048 UBE2BP63146 152 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 DEFB110Q30KQ9 67 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 S100A7L2Q5SY68 101 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 ZNF833PQ6ZTB9 187 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 LCA10Q71F78 164 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 WFDC9Q8NEX5 89 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 RPL39LQ96EH5 51 aaKnown RBP1.78□□□□□ -2.12
LINC01040-201ENST00000425048 TMEM141Q96I45 108 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 TIMM17AQ99595 171 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 DEC1Q9P2X7 70 aa1.78□□□□□ -2.12
LINC01040-201ENST00000425048 F5P12259 2224 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 ASCC3Q8N3C0 2202 aaKnown RBP1.77□□□□□ -2.13
LINC01040-201ENST00000425048 MED13Q9UHV7 2174 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 IGLV11-55A0A075B6I3 123 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 LYRM9A8MSI8 78 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 A8MUN3 132 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 C16orf90A8MZG2 172 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 H3BRN7 92 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV1-69P01742 117 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 CGB3P0DN86 165 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 CGB7P0DN87 165 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 CD28P10747 220 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 WT1-ASQ06250 92 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 SYCNQ0VAF6 134 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 KRTAP13-4Q3LI77 160 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 ENHOQ6UWT2 76 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 C7orf65Q6ZTY9 151 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 GPHB5Q86YW7 130 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 C11orf72Q8NBR9 251 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 CCL4L1Q8NHW4 92 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 CCL17Q92583 94 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 ZNF625Q96I27 306 aaPredicted RBP1.77□□□□□ -2.13
LINC01040-201ENST00000425048 C14orf132Q9NPU4 83 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 CCL26Q9Y258 94 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 PHLDA3Q9Y5J5 127 aa1.77□□□□□ -2.13
LINC01040-201ENST00000425048 IGKV2-40A0A087WW87 121 aaPredicted RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV3-15A0A0B4J1V0 119 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 TRAV22A0A0B4J277 110 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV1-18A0A0C4DH31 117 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 IGKV2D-40P01614 121 aaPredicted RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 TFF1P04155 84 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 SAA1P0DJI8 122 aaPredicted RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 SAA2P0DJI9 122 aaPredicted RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV3-30-3P0DP02 117 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 CCL4P13236 92 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 FUSP35637 526 aaKnown RBP eCLIP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 POLR2KP53803 58 aaKnown RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 ERHP84090 104 aaKnown RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 PDE6HQ13956 83 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 Q5VV11 94 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 FAM19A3Q7Z5A8 133 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 Q8N6K4 173 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 LINC01560Q8TB33 94 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 TMEM167AQ8TBQ9 72 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 PATE1Q8WXA2 126 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 DIRC1Q969H9 104 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 CCL13Q99616 98 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 ZFHX3Q15911 3703 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 DNAJC13O75165 2243 aa1.76□□□□□ -2.13
LINC01040-201ENST00000425048 PRRC2BQ5JSZ5 2229 aaKnown RBP1.76□□□□□ -2.13
LINC01040-201ENST00000425048 PDE4DIPQ5VU43 2346 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 CUL9Q8IWT3 2517 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV3-64A0A075B6Q5 118 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 A0A0J9YXV3 536 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 C5orf67F2Z3F1 127 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 BUB1B-PAK6H3BSN5 160 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 NCR3O14931 201 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 UBE2L6O14933 153 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 GNRH2O43555 120 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 IGLV2-23P01705 113 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms