RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 C3orf84H3BNL1 204 aa11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 NMUP48645 174 aa11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 COX6A2Q02221 97 aa11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 CDKN2A-AS1Q9UH64 79 aa11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 IGLV5-45A0A087WSX0 123 aa11.59□□□□□ -0.55
CCDC28B-202ENST00000421922 K7EP13 123 aa11.59□□□□□ -0.55
CCDC28B-202ENST00000421922 ANKRD39Q53RE8 183 aa11.59□□□□□ -0.55
CCDC28B-202ENST00000421922 ENHOQ6UWT2 76 aa11.59□□□□□ -0.55
CCDC28B-202ENST00000421922 TRAV8-3A0A0A6YYJ7 113 aa11.58□□□□□ -0.56
CCDC28B-202ENST00000421922 TMEM223A0PJW6 202 aa11.58□□□□□ -0.56
CCDC28B-202ENST00000421922 TSTD3H0UI37 97 aa11.58□□□□□ -0.56
CCDC28B-202ENST00000421922 CD164L2Q6UWJ8 174 aa11.58□□□□□ -0.56
CCDC28B-202ENST00000421922 C1orf43Q9BWL3 253 aa11.58□□□□□ -0.56
CCDC28B-202ENST00000421922 E9PLD3 99 aa11.57□□□□□ -0.56
CCDC28B-202ENST00000421922 SPINK8P0C7L1 97 aa11.57□□□□□ -0.56
CCDC28B-202ENST00000421922 RMI2Q96E14 147 aa11.57□□□□□ -0.56
CCDC28B-202ENST00000421922 Q9HAA7 133 aa11.57□□□□□ -0.56
CCDC28B-202ENST00000421922 DNAH7Q8WXX0 4024 aa11.57□□□□□ -0.56
CCDC28B-202ENST00000421922 IGHV3-64A0A075B6Q5 118 aa11.56□□□□□ -0.56
CCDC28B-202ENST00000421922 TTC32Q5I0X7 151 aa11.56□□□□□ -0.56
CCDC28B-202ENST00000421922 PLEKHB2Q96CS7 222 aa11.56□□□□□ -0.56
CCDC28B-202ENST00000421922 GAGE12HA6NDE8 117 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 IBA57-AS1B1ANH7 110 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 COX7A2LO14548 114 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 LGALS3P17931 250 aaKnown RBP11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 MALP21145 153 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 CASC10Q5T4H9 136 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 C5orf38Q86SI9 138 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 PRO1933Q9H354 126 aa11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 DYNC2H1Q8NCM8 4307 aaKnown RBP11.55□□□□□ -0.56
CCDC28B-202ENST00000421922 IGKV2D-24A0A075B6R9 120 aa11.54□□□□□ -0.56
CCDC28B-202ENST00000421922 IGHV3OR16-9A0A0B4J2B5 98 aa11.54□□□□□ -0.56
CCDC28B-202ENST00000421922 LEPROTO15243 131 aa11.54□□□□□ -0.56
CCDC28B-202ENST00000421922 A0A087WZ39 114 aa11.53□□□□□ -0.56
CCDC28B-202ENST00000421922 IGHV1-58A0A0C4DH39 117 aa11.53□□□□□ -0.56
CCDC28B-202ENST00000421922 APOMO95445 188 aa11.52□□□□□ -0.56
CCDC28B-202ENST00000421922 C14orf144Q96I85 54 aa11.52□□□□□ -0.56
CCDC28B-202ENST00000421922 CSMD3Q7Z407 3707 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 TENM2Q9NT68 2774 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 IGKV2D-26A0A0A0MRZ7 120 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 SMIM1B2RUZ4 78 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 J3QQQ9 107 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 COX8AP10176 69 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 SLC25A34Q6PIV7 304 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 LINC01561Q8N1V8 128 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 UQCR10Q9UDW1 63 aa11.52□□□□□ -0.57
CCDC28B-202ENST00000421922 FOXI1Q12951 378 aa11.51□□□□□ -0.57
CCDC28B-202ENST00000421922 BIRC6Q9NR09 4857 aa11.5□□□□□ -0.57
CCDC28B-202ENST00000421922 PRSS2P07478 247 aa11.5□□□□□ -0.57
CCDC28B-202ENST00000421922 TOMM7Q9P0U1 55 aa11.5□□□□□ -0.57
CCDC28B-202ENST00000421922 COX11Q9Y6N1 276 aa11.5□□□□□ -0.57
CCDC28B-202ENST00000421922 NBDYA0A0U1RRE5 68 aa11.49□□□□□ -0.57
CCDC28B-202ENST00000421922 ZNF815PA8K554 130 aa11.49□□□□□ -0.57
CCDC28B-202ENST00000421922 LY6G6CO95867 125 aa11.49□□□□□ -0.57
CCDC28B-202ENST00000421922 TM2D2Q9BX73 214 aa11.49□□□□□ -0.57
CCDC28B-202ENST00000421922 EPPK1P58107 5090 aaKnown RBP11.49□□□□□ -0.57
CCDC28B-202ENST00000421922 IGLV5-39A0A0G2JS06 123 aa11.48□□□□□ -0.57
CCDC28B-202ENST00000421922 PCP2Q8IVA1 136 aa11.48□□□□□ -0.57
CCDC28B-202ENST00000421922 COX7B2Q8TF08 81 aa11.48□□□□□ -0.57
CCDC28B-202ENST00000421922 ORAOV1Q8WV07 137 aa11.48□□□□□ -0.57
CCDC28B-202ENST00000421922 LCE2DQ5TA82 110 aaPredicted RBP11.47□□□□□ -0.57
CCDC28B-202ENST00000421922 CFAP161Q6P656 301 aa11.47□□□□□ -0.57
CCDC28B-202ENST00000421922 MIEN1Q9BRT3 115 aa11.47□□□□□ -0.57
CCDC28B-202ENST00000421922 RYR2Q92736 4967 aa11.47□□□□□ -0.57
CCDC28B-202ENST00000421922 MYMXA0A1B0GTQ4 84 aa11.46□□□□□ -0.57
CCDC28B-202ENST00000421922 TSPEAR-AS2P59090 65 aa11.46□□□□□ -0.57
CCDC28B-202ENST00000421922 STARD9Q9P2P6 4700 aa11.46□□□□□ -0.58
CCDC28B-202ENST00000421922 PCP4L1A6NKN8 68 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 PSCAO43653 123 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 SCGB1D4Q6XE38 83 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 BOD1L2Q8IYS8 172 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 TTTY13Q9BZ97 58 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 NDUFA12Q9UI09 145 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 SACSQ9NZJ4 4579 aa11.45□□□□□ -0.58
CCDC28B-202ENST00000421922 DLEU1O43261 78 aa11.44□□□□□ -0.58
CCDC28B-202ENST00000421922 HNRNPA3P51991 378 aaKnown RBP11.44□□□□□ -0.58
CCDC28B-202ENST00000421922 C6orf226Q5I0X4 101 aa11.44□□□□□ -0.58
CCDC28B-202ENST00000421922 LINC00476Q8WZB0 136 aa11.44□□□□□ -0.58
CCDC28B-202ENST00000421922 KRTAP1-5Q9BYS1 174 aa11.44□□□□□ -0.58
CCDC28B-202ENST00000421922 SPAG11BQ08648 103 aa11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 Q8IZM0 81 aa11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 PLECQ15149 4684 aaKnown RBP11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 M0R2N4 97 aa11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 CKS1BP61024 79 aa11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 KRTAP26-1Q6PEX3 210 aa11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 SFTA2Q6UW10 78 aa11.43□□□□□ -0.58
CCDC28B-202ENST00000421922 NDUFA1O15239 70 aa11.42□□□□□ -0.58
CCDC28B-202ENST00000421922 MAPKAPK5-AS1Q8N8E1 139 aa11.42□□□□□ -0.58
CCDC28B-202ENST00000421922 ZNF561-AS1K7EIQ3 104 aa11.41□□□□□ -0.58
CCDC28B-202ENST00000421922 DDTP30046 118 aa11.41□□□□□ -0.58
CCDC28B-202ENST00000421922 CXCL5P42830 114 aa11.41□□□□□ -0.58
CCDC28B-202ENST00000421922 TP73-AS1Q9UF72 201 aa11.41□□□□□ -0.58
CCDC28B-202ENST00000421922 HERV-K104P63124 156 aa11.4□□□□□ -0.58
CCDC28B-202ENST00000421922 HIGD2BQ4VC39 106 aa11.38□□□□□ -0.59
CCDC28B-202ENST00000421922 MEIG1Q5JSS6 88 aa11.38□□□□□ -0.59
CCDC28B-202ENST00000421922 CIRBPQ14011 172 aaKnown RBP11.37□□□□□ -0.59
CCDC28B-202ENST00000421922 C15orf56Q8N910 161 aa11.36□□□□□ -0.59
CCDC28B-202ENST00000421922 ZNF625Q96I27 306 aaPredicted RBP11.36□□□□□ -0.59
CCDC28B-202ENST00000421922 HIGD1BQ9P298 99 aa11.36□□□□□ -0.59
CCDC28B-202ENST00000421922 A0A0J9YXY3 114 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms